Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq100 572 2e-158 seq1301 118 2e-21 seq689 111 2e-19 >seq100 Length=112360 Score = 572 bits (634), Expect = 2e-158 Identities = 692/942 (73%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 174504 TACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTC 174563 ||| | || |||||||| ||| | ||||||||||| | ||| | || ||| ||||||| Sbjct 40188 TACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTC 40247 Query 174564 ATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCT 174623 ||||||| ||| | | ||||| ||||| ||||| || ||||| || || ||||||||| Sbjct 40248 ATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCT 40307 Query 174624 GGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCA 174683 || || || | |||||||||||||| || | || || || ||||||||||||||||| Sbjct 40308 GGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCA 40367 Query 174684 ATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAAC 174743 || ||| | || || || || || |||||||| || | | || |||||| | || ||| Sbjct 40368 ATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAAC 40427 Query 174744 GGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGA 174803 |||||||| | ||||| | || || |||||| | | ||| | ||| | || Sbjct 40428 GGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGT 40487 Query 174804 CGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCT 174863 |||||||||||| | | ||| ||||| ||| | |||||||| | ||| || | || Sbjct 40488 CGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCC 40547 Query 174864 GCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTC 174923 || ||||| || ||||| |||| |||||| || | ||||| | || ||||| || Sbjct 40548 GCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTT 40607 Query 174924 TCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCA 174983 || || | ||||| || || || || || || || |||| |||||| || |||||||| Sbjct 40608 TCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCC 40667 Query 174984 GAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGT 175043 || |||||||| || ||||| || || |||||| || || || || || || || ||| Sbjct 40668 GAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGT 40727 Query 175044 TCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACT 175103 ||||| || || || ||||| || || | || || || ||| || | ||||| || || Sbjct 40728 TCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCT 40787 Query 175104 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATC 175163 |||| || |||| || ||||| ||||| || || ||||||||||| || ||||| || Sbjct 40788 GAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATT 40847 Query 175164 GTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCA 175223 || || || || || || ||||| | || || || |||||||| || || |||||| Sbjct 40848 GTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCA 40907 Query 175224 CGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTT 175283 || ||| | |||||||||||||| ||||||||||| || || || ||||| || ||| | Sbjct 40908 CGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTA 40967 Query 175284 GGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGAC 175343 || || |||||||| || ||| | || || || ||||| || || || |||| || Sbjct 40968 GGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGAT 41027 Query 175344 GGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATG 175403 | ||||| |||||| | ||||| ||||| ||| || | |||||||| |||||| || Sbjct 41028 AGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATC 41087 Query 175404 GAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGAT 175445 |||||||||||||| | ||||| || ||||||||| ||||| Sbjct 41088 GAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGAT 41129 Score = 434 bits (480), Expect = 2e-116 Identities = 713/1016 (70%), Gaps = 14/1016 (1%) Strand=Plus/Plus Query 175863 GAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTT 175922 || |||||||| | ||| || ||| | ||| | || |||||||| ||| || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 175923 CCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGG 175982 || || ||| | || | || || ||| ||||||| | || ||||| || |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 175983 TACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTC 176042 || |||||||| | ||| |||| | | || ||| ||| ||| | || || ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 176043 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAG 176102 || || || ||| || |||||| |||||| | ||||| | ||||| || ||| | || Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 176103 GGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGT 176162 || | || ||| | || ||||||| |||||| | |||||||| | ||||| Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 176163 GCCTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTAT 176221 || || || || |||||||| ||||| || || |||||| | || || | | || || Sbjct 28886 GCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 176222 CCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCT 176281 || || ||||| ||| | ||||| | || ||||| | ||||| || ||| | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 176282 TCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAAT 176341 || || || |||| ||| | |||||| ||||| || |||||||| |||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAAT 29064 Query 176342 CTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATAT 176401 ||| |||| || | || | || || ||||| || |||||| | || || |||||||| Sbjct 29065 TTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATAT 29124 Query 176402 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGT 176461 ||||||||||||||| || |||| | || |||||| |||||| ||||| | |||||| Sbjct 29125 GATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTGT 29184 Query 176462 TGAAAATACCCTATATGAAGATGGAGA-ACAGAACAACACCTTCACTGCGTTCGATTCCA 176520 ||||||||| || |||||||||||||| ||| | || || || | || || | | Sbjct 29185 TGAAAATACTCTTTATGAAGATGGAGATGCAGCA-AATACATTTAGAGCCTTTACCCCTA 29243 Query 176521 CGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCG 176580 | || |||||| || ||||| |||||||| || ||| | || ||||| ||||| || | Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 176581 GGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGG 176640 | || || ||| ||||| | ||| | ||||| |||||| | ||||| ||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 176641 GTCTTTGGGTCTCAAG---TATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTAT 176696 || | |||| |||| || || || | || ||||| |||| ||| || || ||| Sbjct 29364 GTTTATGGG---CAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTAT 29419 Query 176697 GATTTTGTGAGCCAAGAGATTA-GAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACAC 176755 || ||| | ||||| |||| |||||||||||||||| || || ||||| ||||| || Sbjct 29420 GACTTTATTTCGCAAGA-ATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATAC 29478 Query 176756 AAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACA 176815 ||| || || || | || |||||| ||||| ||||||||| | || || ||||| Sbjct 29479 AAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACA 29538 Query 176816 TGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGCATTGTGATTAA 176871 ||| | | |||| |||||||| || |||| | || ||||| | |||| || Sbjct 29539 TGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGATGAA 29594 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 175295 AATGGCATTC-AACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTA 175353 |||||| || ||| | || || || ||||| || || || |||| || | ||||| | Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAA 112298 Query 175354 GAGTATTGAACACCTGGGCG-GATGT-TCTTAACAGAGCTGGTCTTGGGATGGAAGTAAT 175411 ||||| | ||||| ||||| ||| | | | |||||||| |||||| || |||||||| Sbjct 112297 GAGTAATTAACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAAT 112238 Query 175412 GCATGAGAGAAATGCACACAACTTCCCACTAGAT 175445 |||||| | ||||| || ||||| ||| ||||| Sbjct 112237 GCATGAACGTAATGCTCATAACTT-CCATTAGAT 112205 >seq1301 Length=515170 Score = 118 bits (130), Expect = 2e-21 Identities = 256/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 161306 GTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAG 161365 || ||| | || || |||||||| ||| ||||| || ||| || || || || Sbjct 131989 GTTCGTTTTTATCAAGCATCCACTTCTGAATTGTACGGTAAAGTAGTTGAAACGCCTCAA 132048 Query 161366 AAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATAT 161425 | ||||| || || ||||| ||||| ||||| || || || || ||| | || ||| Sbjct 132049 AGTGAAACTACTCCCTTCTATCCACGTTCTCCTTACGGGGTTGCCAAAATGTACTCTTAT 132108 Query 161426 TGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTC 161485 |||||||||| || ||| |||| ||| || ||| ||| ||| ||| || || ||| Sbjct 132109 TGGATTGTAATCAATTACCGAGAAGCTTACGGAATGTTCGCTTGTAATGGAATCCTTTTC 132168 Query 161486 AACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTA 161545 || ||||| || || || ||| ||||| || ||| | ||||||| | | | | | Sbjct 132169 AATCATGAAAGCCCTCGTCGTGGTCGCACTTTTGTTACCAGAAAGATTAGTCGTGCAGTG 132228 Query 161546 TCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGA 161605 | ||| | ||| | |||||| | || | |||||| | | | | ||| Sbjct 132229 GCTGAAATTCATTTGGGAGTGAGTGATTGTTTGTATTTGGGTAATTTGGATGCTAAACGT 132288 Query 161606 GATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACT 161665 || ||||||||||| || || || || | |||||||||||||||||||| ||| Sbjct 132289 GACTGGGGTCATGCACGTGATTACGTTGAAGGAATGTGGTTGATGTTACAACAAGAAGAA 132348 Query 161666 CCTGATGACTATGTGATTGCCAC 161688 || | |||| ||| || |||| Sbjct 132349 CCACAAGACTTTGTCCTTTCCAC 132371 >seq689 Length=1406 Score = 111 bits (122), Expect = 2e-19 Identities = 348/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || || |||||||||||||| | ||| ||||| || || | || |||||| ||| Sbjct 812 CCGGACGAGATCTACAACCTGGCGGCCCAGAGCCACGTCCAGGTCAGCTTCGAGACGCCT 871 Query 161228 GAATATA-CAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCT 161286 ||||| | ||||| | | || || || ||||| | | |||| || | || | Sbjct 872 GAATACACCAGCA-ACGCCGACGCCACCGGCACCCTGCGCCTGCTGGAAGCCATCCGCAT 930 Query 161287 CCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 ||| || || | | | ||| |||||||||| || ||| || ||||||| | Sbjct 931 CCTGGGCCTGGAGAAGAAGACCCGGTTCTACCAGGCCTCGACCTCGGAACTGTATGGCCT 990 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| || || || |||| || | || || ||||| || || || || | || Sbjct 991 GGTCCAGGAAGTGCCGCAGAGCGAGAAGACCCCCTTCTATCCGCGCAGCCCCTACGCCGC 1050 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 || || |||||||| || ||||| || |||||| | ||| ||||| || ||||| Sbjct 1051 CGCCAAGCTCTATGGCTACTGGATCGTGGTCAACTACCGCGAGGCCTATGGCATCCACGC 1110 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 ||| | || || || |||||||| ||| || | ||||| ||||| ||||| ||||| Sbjct 1111 CAGCAACGGCATCCTGTTCAACCACGAGAGCCCGCTGCGGGGCGAGACCTTCGTCACCCG 1170 Query 161527 TAAGATTACTAGGGGACTATCCCG--TATTAGTACAGGAC-TACAGGATTGTCTATACCT 161583 ||||| || | | | || || || | |||| | | ||||| || || || Sbjct 1171 CAAGATCACCCGCG--CCGTCGCGGCGATCA-AGCAGGGCTTCCAGGACAAGCTCTATCT 1227 Query 161584 AGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGT-GGAGGCTATGT 161642 || ||||| || | | || || ||||| || || || ||||| | ||| |||| Sbjct 1228 CGGCAATCTCGACGCCAAGCGCGACTGGGGCCACGCCCGCGAATATGTCCGCGGC-ATGT 1286 Query 161643 GGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 || ||||| | || || || || || || ||||| || | ||||| || Sbjct 1287 GGCTGATGCTGCAGCAAGACACGCCGGACGACTACGTCCTGGCCACCGG 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729909846280200