Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq100 524 9e-144 >seq100 Length=112360 Score = 524 bits (580), Expect = 9e-144 Identities = 685/946 (72%), Gaps = 4/946 (0%) Strand=Plus/Plus Query 178901 TTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCG 178960 |||| |||||||| || |||||||||||||| | | | || |||| |||||||| Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTA 40251 Query 178961 TTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTT 179020 | | ||| | ||||| ||||| || || ||||| || || || || || || ||||| | Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 179021 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTG 179080 | || | |||||||||||||| || | || | || | || |||||||||||||||| Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 179081 GTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTG 179140 || | || || || || || |||||||| || || | ||||| ||| | |||||||||| Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 179141 GTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTG 179200 |||| | |||||| |||| || |||||| | | || | | ||| | || |||| Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 179201 AGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCAC 179260 |||||||| | | || |||| ||||| || ||||| | |||||| | || || | Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 179261 CAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 179320 |||| ||||| || | || |||||| | | ||||| | || ||||| ||| |||| Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 179321 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 179380 ||| ||||||| | || || || || |||||||||| |||| | || |||||||| || | Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 179381 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 179440 | ||||| | ||||| || || || ||| ||||| ||||| || || || || || Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 179441 TTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGA 179500 | || ||||| ||||||||| | | || ||||| || || |||||||||| |||| | Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 179501 CAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCG 179560 || |||| || ||||| || || || |||||||||||||| || ||||| || || | Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 179561 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCT 179620 | || || || || ||||| | || || || ||||| ||| ||||| |||||||| | Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 179621 CTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCG 179680 | || ||||||||| | ||||| ||||| || || || || ||||| ||||| | || Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAA 40971 Query 179681 TGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTC 179740 | || ||||| || ||| | ||||| || ||||| || || || || |||| | | Sbjct 40972 TTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCC 41031 Query 179741 AAGGACGTGTCCTTAACACATGGGCGGACGTATTG--AACCGTGCAGGTTTGGGTATGGA 179798 ||||| | || ||||||| ||||| || ||||| ||| | ||| | | || || || Sbjct 41032 AAGGAAGAGTAATTAACACTTGGGCAGA--TATTGTAAACAGAGCAAATCTTGGAATCGA 41089 Query 179799 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 179844 ||| |||||||| ||||| || || ||||||||| | || |||||| Sbjct 41090 AGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 430 bits (476), Expect = 2e-115 Identities = 701/1007 (70%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || |||||||| ||| ||| | ||||||||||| || |||||||| || || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 180093 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 180152 || || ||| | || | || || ||| ||||||| | | ||||| || |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 180153 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 180212 || ||||| || | ||| |||| | | |||||| ||| ||| | ||||| ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 180213 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 180272 || || || ||| | |||||| |||||| | ||||| | ||||| || || | || Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 180273 GGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGT 180332 || ||||| |||| || |||| || || |||| || || || | ||||| Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 180333 GCCTTCGCCCTAATTGGATTTATGC-TACGCCAGTTTGAACTGGCACGTCTTATTGGTAT 180391 || || || |||||||||||| ||| |||| || |||||| | || || | | || || Sbjct 28886 GCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 180392 CCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCT 180451 || |||||||||||| | ||||| || | || ||||| | ||||| ||| ||| | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 180452 CATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAAT 180511 | || || | || || | || ||||| ||||| || |||||| || |||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAAT 29064 Query 180512 CTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 180571 ||| |||| |||| || | || || ||||| || ||||| | || || |||||||| Sbjct 29065 TTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATAT 29124 Query 180572 GATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGT 180631 ||||||||||||||| || |||| | || || |||| ||||| ||||| | ||||| Sbjct 29125 GATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTGT 29184 Query 180632 GGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAAC 180691 || || || || |||||||||||||| |||||| || |||| || ||| | || Sbjct 29185 TGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTAC 29244 Query 180692 GCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 ||| ||| ||||| || || ||||| || || ||| | || ||||| || || || || Sbjct 29245 TCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTGG 29304 Query 180752 TATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 180811 | || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | || Sbjct 29305 AGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCGG 29364 Query 180812 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 180871 | ||||| || | | || || ||| | || ||||| | ||| | || || || || || Sbjct 29365 TTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACTT 29424 Query 180872 CGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAA 180931 | ||||| | |||||||||||||||| || ||||| || ||||| || || || Sbjct 29425 TATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAAA 29484 Query 180932 CATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAA 180991 || | || ||||||||| || | |||| |||| | || || ||||| ||||| Sbjct 29485 TATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAAA 29544 Query 180992 CTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGCATTGTGAT 181038 | || || || ||||| || ||||| | || ||||| | |||| Sbjct 29545 TTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610313082955200