Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1526 286 3e-72 seq368 152 4e-32 >seq1526 Length=132622 Score = 286 bits (316), Expect = 3e-72 Identities = 599/883 (68%), Gaps = 16/883 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | ||||| || | ||||| || || |||||| | ||||| || || | || Sbjct 119275 TTCGTCCTCTTTCCCATCAAGTATCACGATATTTGGCAATTCTACAAGAAGGCTGAAGCT 119216 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || ||||| || ||||||||||| | | || ||| || ||||||| | | | Sbjct 119215 TCCTTCTGGACTGCCGAAGAAGTTGACCTTTCCAAGGACATAAAACATTGGGACGAA--A 119158 Query 43820 AAACCACAA--GAAAAAC-ATT--TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 | || | || ||| ||| || | ||| |||||||| || |||||||| | Sbjct 119157 AGTTGACTAACGATGAACGATTCTTTGTTTCTCGTGTTTTGGCTTTCTTTGCTGCCTCTG 119098 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || ||||||||||| ||||||| ||| || || |||||||||||| | ||||||| Sbjct 119097 ATGGTATTGTCAATGAAAACTTGGTTACTCGTTTCGCACAAGAAGTTCAAGTTCCAGAAG 119038 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | || || ||||| ||||| ||||| || ||||| ||||| | ||||||||| || Sbjct 119037 CTCGTTGCTTTTACGGGTTCCAAATCATGATTGAAAACATTCACGCTGAAATGTACTCTC 118978 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTT---AATGCGA 44051 | || || ||||| ||||| || || || || | ||| || ||||| | Sbjct 118977 TCCTCATTGATACCTACATTCGTGACC--CAGTTGA-GCGTAAATTCCTTTTCAATGCCA 118921 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAATTC 44109 | || || | ||| || | || | ||||||||| | ||||| ||| || Sbjct 118920 TTGACACCATCCCTTGTGTTCGCAAGAAGGGAGACTGGGCTATGCGTTGGATTGAAAATC 118861 Query 44110 AAATGAT-TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | | |||||||||||| ||||| || ||||| | |||||||| || ||||||| Sbjct 118860 AAACTAGCTGTTTTGGAGAACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTT 118801 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||| ||||| || ||||| ||||| || || |||||||| || ||||| | Sbjct 118800 CCGGTTCATTTGCTGCCATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCT 118741 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || ||||| |||| || ||||| ||||| | ||||| |||||||| || |||||| Sbjct 118740 TCTCCAATGAACTAATCAGCCGTGACGAAGGTCTTCATTGTGATTTTGCCTGTTTGTTAT 118681 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 | | | | | || | ||||| | || || || | || || || | Sbjct 118680 TCAGGCACTTGCGTCACACTCGTCCTTCTGATGCCACTATAACTCACATCATTACGGAAG 118621 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 | || ||||| ||||| ||||| |||| || || || || ||| || || |||| Sbjct 118620 CTGTCAAGATTGAACAGGAATTCCTGACGGAGGCCTTGCCCGTTGCTTTGATTGGCATGA 118561 Query 44409 ATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGG 44468 || | | ||| ||| || ||||||| |||| ||||| || | | | ||| Sbjct 118560 ATTGCGCTCTCATGTGCCAGTACATTGAATTTGTTGCTGATCGCTTGTTGGTTGCCCTGC 118501 Query 44469 GTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 ||| ||| || | |||| | || || || ||||| ||||| ||||| ||| Sbjct 118500 AGTGCCCCAAATTTTACAATGTAGACAATCCTTTCGATTTCATGGACTTGATTTCCTTGC 118441 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||| || || ||||| |||||||| ||||| || || || Sbjct 118440 AAGGAAAGACTAACTTCTTTGAAAAGAAGGTTGGTGAGTACCA 118398 >seq368 Length=262043 Score = 152 bits (168), Expect = 4e-32 Identities = 285/410 (70%), Gaps = 9/410 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| || ||||| || || ||||||||| | | | | ||| |||| Sbjct 28714 GCTTTCTTTGCTGCTAGTGACGGCATCGTGAATGAAAATCTAGCCA-TGAATTTTAGCAA 28656 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| || | ||||| || || || ||||| ||||||||||| || || || ||||| Sbjct 28655 CGAAGTGCAGGTGCCAGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATAT 28596 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 || |||||| ||||| ||| |||| || ||||| |||||||| | | |||||| | Sbjct 28595 ACACTCGGAAGTGTACTCGCTTTTGATTGACACGTATATCAAAGACGCGATTGAGAAGGA 28536 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | | ||| || || || | || |||| | | | ||||| ||||||| | Sbjct 28535 CCATCTACTACGTGCTATCGAGACTATCCCTTGCG-TCACCAAAAAAGCGCACTGGGCTC 28477 Query 44094 TTAAATGGATAAATTCAAATG---ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||| || || | ||| | | |||||| ||| | || ||||| | | Sbjct 28476 TGAAGTGGTGCGATCCACGGGTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAG 28417 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | ||||||||||| || || || || || ||| |||| |||||| | ||||| || ||| Sbjct 28416 TTGAAGGCATTTTTTTCTCTGGCTCATTCTGC-TCCATCTTTTGGCTCAAGAAGCGCGGT 28358 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 || |||||||| | | |||||||| ||| | || || || || || || Sbjct 28357 TTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCGGGACGAGGG 28308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445512750825