Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1301 197 1e-45 seq312 100 2e-16 seq1422 98.7 8e-16 seq1355 86.0 5e-12 >seq1301 Length=515170 Score = 197 bits (218), Expect = 1e-45 Identities = 961/1507 (64%), Gaps = 29/1507 (2%) Strand=Plus/Plus Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 ||||| || |||||||| | || || | | |||||||||| ||||| || |||||| Sbjct 331801 ATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGTGAAAGGCTCAAAG 331860 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 |||| |||| || | ||||| | |||| || || |||||| || | ||| | Sbjct 331861 CATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGGAGCAAGTAACAAG 331920 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 |||||||||| ||| || | || || |||||| | ||||||||| | | Sbjct 331921 GAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGACCAATCCCACAAGTCG 331980 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGAT 130999 | ||| | ||||| |||||| ||| |||| | | || || || | || || Sbjct 331981 GAAGGGGTCACATT---CCACATGTCATATTGCAAAACACCCTTGCTCACAGGGCTACCC 332037 Query 131000 TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCG 131059 | | | || ||| |||||| | |||||| || ||||||||| || || Sbjct 332038 GGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAGCTTCCAAGGCACCA 332097 Query 131060 TAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGA 131119 || || ||||| || ||||| ||||| ||||| || | | | || | || Sbjct 332098 TAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCGTTCACAATCAAATGGC 332157 Query 131120 AATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 | | ||| | ||| ||||| || || | || || | |||| || | || | ||| Sbjct 332158 ATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGATGA 332217 Query 131180 TTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTT 131239 | |||| | ||| | ||| || ||| || | |||||| || || Sbjct 332218 CGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAATGATACGATTC 332277 Query 131240 AAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTT 131299 || || |||| | | || |||||||| | ||||||||| ||| | Sbjct 332278 AAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAAATCAAAAGTGTTCTTA 332337 Query 131300 TCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCA 131359 || || ||||| | | | || || |||| ||| ||||| || | || ||| Sbjct 332338 TCC---TTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACAGCAATCTCATCA 332394 Query 131360 TAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTT 131419 | | | || | ||||||||| | |||||||| | || ||||| ||||| ||| Sbjct 332395 GGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATGGTTCCCAAGTTT 332454 Query 131420 TGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCG 131479 ||||||||||| || | ||| | |||||||||| |||||| || || || ||||| Sbjct 332455 TGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCA 332514 Query 131480 ACTTGAGTTTCAATAAT-GTATCGAAAGAGTTTTCGAGCA-GACAATTGATATTTGTATT 131537 ||||||| ||| | ||| | || || || ||| ||||| || | | | || Sbjct 332515 ACTTGAGATTCCAAAATAGCATTCCAA-AGCTTTTGAGCACGAACAACACGACGAGCAT- 332572 Query 131538 GGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGG---CCAAACGAACTGT 131594 | || |||||||| || ||||| | | |||||| || | |||||| | | | Sbjct 332573 GACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAA-TTCAGCACCCCAAAC-ATCAGA 332630 Query 131595 CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCT 131654 | ||| |||||||| | || || | || ||||| | ||| |||||| |||| Sbjct 332631 C-AAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCAGCTTCAACACGCT 332689 Query 131655 TCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTG 131714 |||| |||||||| | ||| || || || |||| || | ||| ||||| Sbjct 332690 TCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCACGAACTTCTTCCT 332749 Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 | || | | || ||||||| |||||||| |||| ||| || ||||| |||||||| | Sbjct 332750 TCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCACGGTTCCAAGT 332809 Query 131775 ACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGT 131831 | || || | || || |||||| || ||||||| ||| | |||| || |||| | Sbjct 332810 AGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACGAGCCGTGTTAT 332869 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGC 131891 |||| || || | |||||| | | ||| |||| | ||||| |||| |||||| Sbjct 332870 TGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCCAGAAATGTACG 332929 Query 131892 TGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTA 131951 ||| || | || ||||||| ||| | |||||||| || | |||| || || | Sbjct 332930 AACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGCAGATTTGGAAATCA 332989 Query 131952 GTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT-GTCGACT 132010 || || | ||| ||| | ||| ||||| || | ||| | | || ||| || Sbjct 332990 AAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATCAGACATCGTCAAC- 333048 Query 132011 AAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCG 132070 || |||||||| |||| || | ||| || ||||| || | ||||| || Sbjct 333049 AAGAAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATGGAAGAGGGTGGGTGAACCG 333108 Query 132071 TGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC-GCC 132129 || |||||| |||| |||| | ||||||| ||||| || || || || | Sbjct 333109 TGAGTAAAATACTTTTCACTCATGAAATTGTACGATTCAATAGCCGAGTCAATGTCAGTA 333168 Query 132130 CAGATGTATGGTCAATGCGACC-CGCATGTACATGTGTTGAATGCGCTCGGC--CGTTTT 132186 | | || || | |||| | | |||||| |||||||||| || || | || || Sbjct 333169 CCG-TGCATTC-CTATGCAAACACGCATGAGCATGTGTTGAGGACGTTCAACGACGCGTT 333226 Query 132187 GCCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTATTC 132246 | | ||||| ||||| || | ||| | ||| ||||||||||| || ||||| | Sbjct 333227 --CATTAATTTTCATCAAGTATGCACGTTCAAGAGTCTTGAAACCAAAGTAATTGTAATT 333284 Query 132247 ATAATCA 132253 |||||| Sbjct 333285 GTAATCA 333291 >seq312 Length=309945 Score = 100 bits (110), Expect = 2e-16 Identities = 183/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 130733 AGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCC-AGGACGCGTCTAAC 130791 || ||||| | || || || || | ||| ||| || |||||| | |||||| | | Sbjct 19138 AGCTCTTTCATCAGATACTTGTTTACGATCGTAAACTCGCCAGCCCAAGACGCGGCGATT 19079 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 ||| |||||| ||| || || |||| |||||||||||||| || ||||| || || | Sbjct 19078 GTACATGTTGGACGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGA 19019 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || ||||||||| || || || || || || || || || ||| | ||| ||| Sbjct 19018 CGCCGTGGGCATGGGCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTC 18959 Query 130912 CTTCAATTCATCCCAATCCCATAG---AGAGGTAGGTTTGACATTGTTCCACATATCAAA 130968 ||||| | | |||||||||| || || | | | |||| | |||||| ||||| Sbjct 18958 CTTCAGTGCCGCCCAATCCCAGAGGCCCGATG-ACGCGTGAC---GCCCCACATGTCAAA 18903 Query 130969 TTGTAGTATGCCTTTACTGGCGGG 130992 ||| | || |||| ||| ||||| Sbjct 18902 TTGAAAGATCCCTTGACTCGCGGG 18879 >seq1422 Length=277306 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||||||||| || | |||| || | |||| | || || || ||||||||||| Sbjct 271323 TGCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAG 271264 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || |||| |||||||| || ||||| | || |||||||| ||||| || | Sbjct 271263 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTG 271204 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| | || | | | || | | ||| | | ||| | Sbjct 271203 GAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCA 271144 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | || || |||||||| || || || |||||||| Sbjct 271143 CGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||||||||| || | ||||| || | |||||| || || |||||||||||||| Sbjct 271551 TGCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAG 271492 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || |||| |||||||| || || || | || |||||||| ||||| || | Sbjct 271491 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTG 271432 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| | || | | || | | || | || || | Sbjct 271431 GAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCA 271372 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || |||| ||| || ||||| |||||||| Sbjct 271371 CGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 >seq1355 Length=184863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| ||||| || | || | || || || || || || |||||||||| Sbjct 91111 TGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 91170 Query 27079 TC-ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | ||| || |||| || | ||| || || || |||| ||||| || || || || Sbjct 91171 TCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 91230 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | || || || || ||||| | |||| | | || | | ||| | |||| || Sbjct 91231 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGC-TC 91289 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || | || |||||||| || || ||||| || ||||| Sbjct 91290 TACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923187707480