Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1342 105 2e-17 seq1526 91.5 5e-13 >seq1342 Length=132421 Score = 105 bits (116), Expect = 2e-17 Identities = 219/320 (68%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| || |||||| | || || || || || ||| || |||||||||||||| ||| Sbjct 2024 GGCATCATTCCAATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATCAAGGTGGC 2083 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAA 255088 || |||||| ||| |||| ||||||| || ||||| |||||||| || ||||| Sbjct 2084 GGGAAACGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTGTTTGAA 2143 Query 255089 CGGTTTTTACTGCTGTCCGACAAGAC-CGGCACCGAGGAGCTGATC--GCCCGCGACATC 255145 ||| || | || | || || | ||||| |||| || ||| || || || | Sbjct 2144 ---TTTCTAGAGTTG-CGGAAAAACCACGGCAACGAGTTGC--ATCGTGCTCGGGATTTG 2197 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGG 255205 | || | ||| | ||||| |||||| ||||||||| | | || ||| Sbjct 2198 TTTTTTGCCTTGTGGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGG 2257 Query 255206 AGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAA 255265 || ||| | ||||||||| | |||| ||||| ||| | ||||||||||| |||||| Sbjct 2258 AGTCTCTTTTGTCCCAACGAAGCGCCGGGTCTGTACGAATGTTGGGGTGACGCGTTTGAG 2317 Query 255266 AAACTGTATCTGGAGTACGA 255285 | |||| | ||||||| Sbjct 2318 ACCTTGTACGTCCAGTACGA 2337 >seq1526 Length=132622 Score = 91.5 bits (100), Expect = 5e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 || || || || |||||||||| || ||||| | || ||| ||| ||| || | Sbjct 118843 GAACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATTT-GCTGC 118785 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 ||| ||||||||||| ||||| || | |||| |||| ||||||| || ||||| || Sbjct 118784 CATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAACTAAT 118725 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGT 443862 ||| || ||||| ||| | ||||| || || |||||| Sbjct 118724 CAGCCGTGACGAAGGTCTTCATTGTGATTTTGCCTGT 118688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588291941048425