Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1301 187 3e-42 seq1526 105 8e-18 seq1923 95.1 2e-14 seq1679 86.0 8e-12 >seq1301 Length=515170 Score = 187 bits (206), Expect = 3e-42 Identities = 1045/1649 (63%), Gaps = 39/1649 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 || ||||| || ||||| | || | ||||| |||| | |||||| |||| | ||| Sbjct 331495 TAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTC 331554 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC 110488 || | ||||| | ||| | ||||| |||||||||||| |||||||| || Sbjct 331555 GAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCA 331614 Query 110489 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGA 110548 || | || |||| ||||| | | || ||||||||||||||| || | Sbjct 331615 CGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTCTTGTACAAG 331674 Query 110549 TTCTTGATATCATCTGGGATATCTGAGA-TATTCTGGATGGAACCCCCCGCCTTCACCAT 110607 | ||| | || | ||||| ||| || | || || | ||||| ||||| | || Sbjct 331675 TCCTTCAATTCTTGCGGGATG-CTGGGAATCTTTTGTACTGAACCACCCGCAGCAATGAT 331733 Query 110608 GAGATCCTTCAT--ATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 | ||| |||||| || | | || | ||||| | | | || || | | || Sbjct 331734 GCGATTCTTCATGGATTCATTCCACA-ATCCCAAT-TCAGTCAAATCCTTCATCAAGTAT 331791 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 | |||||||| || ||||| || | | | ||| ||||| | ||| | Sbjct 331792 TGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGTGAAA 331851 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||||||||| | ||| | ||||| | ||| || || || ||||| || || Sbjct 331852 GGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGGAGCA 331911 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | || | ||||||| ||| | || || |||| | | | ||| || Sbjct 331912 AGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGACCAATCC 331971 Query 110846 TAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || |||| |||| |||||||| | || | || || | | | | || Sbjct 331972 CACAAGTCGGAAGGGGTCACATTCC-ACATGTCATATTGCAAAACACCCTTGCTCACAGG 332030 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964 |||| | |||| |||| |||| || |||||||||||| || |||| Sbjct 332031 GCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAGCTTCCAA 332090 Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 111024 || | | || ||||| |||||||| | ||||| | || || |||| Sbjct 332091 GGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCGTTCACAATC 332150 Query 111025 AAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 111083 ||||| | | ||| || ||| || |||| || | |||||||| || | |||||| | Sbjct 332151 AAATG-GCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGG 332209 Query 111084 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 111143 | | || ||||||||||| || || ||||| || ||| |||| |||||||| Sbjct 332210 GACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAATGA 332269 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG----AAGTTTTTCATAATCA 111199 || || | || ||||| |||| ||| | | |||| || | ||| | ||||| Sbjct 332270 TACGATTCAAGTTCTTGGTGACAACCTTGGCAA---CATGTTTCAATTCTTTGA-AATCA 332325 Query 111200 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 |||||| ||| || |||||| | || | || || || ||||||||||||||| Sbjct 332326 AAAGTGT---TCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACA 332382 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATC 111319 || ||||||| | | | ||| || | |||||| ||||| || ||||||| || || Sbjct 332383 GCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATG 332442 Query 111320 GTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 111379 || ||||| || | ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 332443 GTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGA 332502 Query 111380 GTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATG 111439 || || || || || |||| | |||||| ||||||| | || | |||| Sbjct 332503 GTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAACAA-C 332561 Query 111440 GCGTTG-GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498 || | || | || || |||||||| ||| || |||||||| || ||||| Sbjct 332562 ACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCAGCACCCCA 332621 Query 111499 CGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 | || || | ||| || | | ||| ||||| || ||||| | | | | || Sbjct 332622 AACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCAGCTTC 332681 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 ||| ||||||||||| | || |||||||| | | || | || | | ||| | Sbjct 332682 AACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCACGAAC 332741 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||||| | || ||| || | || || | || || | | || |||||||| | Sbjct 332742 TTCTTCCTTCCCAGTGTT-CTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCACG 332800 Query 111678 GCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGC 111731 | || | ||||| || | || ||| ||||| ||| |||||| || || | Sbjct 332801 GTTCCAAGTAGACGGCAAAAGCACCC---GGACGCTTATTACCACCTTGATCAACGTAAC 332857 Query 111732 GCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCC 111791 | || ||| || | || |||||||| |||| || ||||| ||||||||||| || | Sbjct 332858 GAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGC 332917 Query 111792 CCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851 | ||| || | || | | | || |||| || |||||||| ||||| Sbjct 332918 CAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGCAG 332977 Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911 | || || || ||||| | | | |||| |||| ||||| | || ||||| || Sbjct 332978 ATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATCAG 333037 Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--GTACCAGCATTGAAGAG 111969 | | | | ||||||| |||| || || || | ||||| |||| |||||| Sbjct 333038 ACATCGTCAACAAGAAGCAAGAAGACAGTTGAGG--ATGATTAGTACCGGCATGGAAGAG 333095 Query 111970 GGTTGGTGTTGCGTGAATGAACATACCTT 111998 ||| |||| ||||| | || |||| || Sbjct 333096 GGTGGGTGAACCGTGAGT-AAAATACTTT 333123 >seq1526 Length=132622 Score = 105 bits (116), Expect = 8e-18 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || || ||||| || || ||| || |||||||| |||||| | ||| Sbjct 118691 GGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACC 118750 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 ||||| | || |||||||||||||| |||| || ||| ||||| ||||| ||||||| Sbjct 118751 GGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCA-AATGAACCGGAAAAGAAGA 118809 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG--CATC 122834 |||| ||||| ||||| |||| ||||||||| | || ||| || |||| || Sbjct 118810 TACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAG--TTTGATTTTC 118867 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864 || ||| ||| ||||| | ||||||| Sbjct 118868 AATCCAACGCATAGCCCAGTCTCCCTTCTT 118897 >seq1923 Length=74424 Score = 95.1 bits (104), Expect = 2e-14 Identities = 203/299 (68%), Gaps = 21/299 (7%) Strand=Plus/Minus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| || |||||||| || || || | | || | ||| || | ||| | || |||| Sbjct 15140 CTTGACGGTCAAAACGGCCTGGACGCAACAAAGCCTTATCCAGAACATCGGCACGGTTAG 15081 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG--TCAAAGCCATCCATCTCGGTGAGTAA 11562 | || || ||||| | | ||||| | ||| ||||| |||||||| || || | Sbjct 15080 TCGCTGCGATAACGATCACGCCAGAAT--TTGGCTCAAAACCATCCATTTCCACCAGCAT 15023 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG------CACTGCG 11616 ||| |||| ||||||||| | |||||| || | |||||||| ||| || Sbjct 15022 TTGGTTAAGTGTTTGTTCACGCTCATCGTTACC------ACCACCAGTGCCCGCACCACG 14969 Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTTCGCGG 11674 || || |||||||||||||||||||| || | ||||| || || |||| | Sbjct 14968 GTGACGTCCTACCGCATCAATCTCATCAATAAAAATGATACAAGGCGATGCTTTTTTTGC 14909 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||| |||| | ||| || || | | |||||| |||||||||||||| || || || Sbjct 14908 CTGAT--CAAACATATCACGCACACGTGCGGCACCGACACCAACAAACATTTCAACGAA 14852 >seq1679 Length=190720 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 190561 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 190620 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 190621 CCGGTAGGAGCT 190632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015003884000