Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1301 199 5e-46 seq368 125 9e-24 seq1526 111 2e-19 seq1221 98.7 1e-15 seq1445 86.0 8e-12 seq1177 84.2 3e-11 >seq1301 Length=515170 Score = 199 bits (220), Expect = 5e-46 Identities = 922/1445 (64%), Gaps = 40/1445 (3%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||| ||||| || ||||| | || ||||||| | || | ||||||||| | |||||| Sbjct 331494 GTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTT 331553 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || | |||||| | ||| | ||||| |||||| |||||| ||||| || Sbjct 331554 CGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACC 331613 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGT 118017 ||||| || |||| ||||| | | || |||| ||||||| || ||| ||| Sbjct 331614 ACGATCAGCAGCCAAGTCAATAATGACTTT----TTGAGAAATTTCCCAAACTGTCTTGT 331669 Query 118018 AGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGA 118077 | | || ||| | || | ||||| || ||||| | || |||||||| | Sbjct 331670 ACAAGTCCTTCAATTCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGCAGCAA 331729 Query 118078 CCATGAGATCCTTCAT--ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 118135 ||| ||| |||||| || | || || | ||||| | | | ||||| || | Sbjct 331730 TGATGCGATTCTTCATGGATTCATTCCACA-ATCCCAAT-TCAGTCAAATCCTTCATCAA 331787 Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 | | |||||||| || ||||| || | || | || || |||| || Sbjct 331788 GTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGT 331847 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 | | ||||||||||| ||||||| ||| | ||||| | || || || || |||||||| Sbjct 331848 GAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGG 331907 Query 118256 TGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCC 118314 || | | | |||| ||||| | ||| | ||| ||| |||| | ||| || Sbjct 331908 AGCAAGTAACAAGGAA-TTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGACC 331966 Query 118315 AGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 | || | || | ||| | | |||||| ||| | || | | ||| | | Sbjct 331967 AATCCCACAAGTCGGAAGGGGTCACA---TTCCACATGTCATATTGCAAAACACCCTTGC 332023 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 118431 | | || ||| | || | ||| | || |||| | |||||||| | | Sbjct 332024 TCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAG 332083 Query 118432 CCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCG 118490 | || | ||| | | || || || ||||| || | ||||| ||| | | | || Sbjct 332084 CTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAG--CGCG 332141 Query 118491 T-CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 | | ||||||| | | ||| || ||| || |||| || | ||||| || || | Sbjct 332142 TTCACAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAAT 332201 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCT 118609 ||||| || ||||| | ||||||||| ||||| || || || ||| |||| Sbjct 332202 ACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGAC 332261 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA----TTTCATGAAGCTTTT 118665 || || | | ||| | || |||||||||||||| | | ||||| | |||| Sbjct 332262 GTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCA--ATTCTTT- 332318 Query 118666 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 118725 | |||||||| || ||| || |||||| | ||| | || || || |||| || Sbjct 332319 -GAAATCAAAAGTGT---TCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAAT 332374 Query 118726 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAAC 118785 | || |||| ||||||| | | | ||| || | |||||| || ||||| || |||| Sbjct 332375 TGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAAC 332434 Query 118786 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 118845 || ||||| |||||||| | |||||| ||| | || || ||||||||||| |||| Sbjct 332435 ATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCA 332494 Query 118846 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG 118905 |||| || || || || || ||| || | | |||||| ||||| | | ||| Sbjct 332495 TGTAAGGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCAC 332554 Query 118906 GCACAGTGGCGTTG-GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 118964 | ||| || | || | || || | |||||||| ||| || |||||||| || Sbjct 332555 GAACA-ACACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCA 332613 Query 118965 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 ||||| | || || | || || | || |||||||||||| ||||| | | Sbjct 332614 GCACCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCG 332673 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 119084 | | ||||| ||||||||||| | || ||||| | || |||| | || ||| Sbjct 332674 TCAGCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGA 332733 Query 119085 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 119144 ||| ||||||| | ||| || ||| ||||||||||| | | || ||| Sbjct 332734 GCACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCG 332793 Query 119145 TGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACA 119201 ||||||||||||| ||| || || | | ||| ||| | |||| | || | || Sbjct 332794 TGCCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACG 332853 Query 119202 TACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTT 119261 || | || ||| || | ||||||||||| |||| | ||||| |||||| ||||| Sbjct 332854 TAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTC 332913 Query 119262 GTCCC 119266 || || Sbjct 332914 GTGCC 332918 >seq368 Length=262043 Score = 125 bits (138), Expect = 9e-24 Identities = 357/541 (66%), Gaps = 17/541 (3%) Strand=Plus/Plus Query 129717 CCAGCTTGCCA-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 ||||||| | | || || ||||| || ||||| || ||||||||||| || | | | Sbjct 27990 CCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTTGTCTTGCCCTGGAGAGAG 28049 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGT 129835 || | ||||| |||| ||||||||||||| | | || | ||||| | | Sbjct 28050 ATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAG 28109 Query 129836 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCG 129895 | || |||||||| | || | ||||||||| |||| | |||||||| || Sbjct 28110 TAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCA 28169 Query 129896 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGC 129955 || || | ||||||| ||| | |||| | | ||||| ||||||| || || Sbjct 28170 ATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGA 28229 Query 129956 ACGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-- 130011 | ||| |||| | | || | | || ||| | | || ||| ||| |||| | Sbjct 28230 ATGATTTCGTGCACGCGGTATTC-TGGCAGCT-TGGTGACCAAT---TTG--GAGTACAA 28282 Query 130012 ----CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 130067 |||| |||| ||| ||| | ||||||||| ||| || || || || || |||| Sbjct 28283 AAGGCACG-CAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGC 28341 Query 130068 ACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGA 130127 ||||| ||||| | ||| |||||||| | ||| || || | || ||||||||||||| Sbjct 28342 TTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGA 28401 Query 130128 AGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTG 130187 | || || || || || || || || || || || || | | |||| | | || Sbjct 28402 AAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTG 28461 Query 130188 TATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCG 130247 ||| ||||||||| ||||| ||||| ||||| || || |||| |||| ||| | Sbjct 28462 GATCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAG 28521 Query 130248 C 130248 | Sbjct 28522 C 28522 >seq1526 Length=132622 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || ||||| ||||||||| ||| |||||||| |||||| || ||| Sbjct 118691 GGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACC 118750 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | || |||||||||||||||||||| ||| |||||| || || |||||||| Sbjct 118751 GGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGAT 118810 Query 130135 CCCCTCCAC 130143 || ||||| Sbjct 118811 ACCTTCCAC 118819 >seq1221 Length=33640 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/524 (65%), Gaps = 10/524 (2%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| ||| || |||||||| || || | |||| || || ||| || || || || Sbjct 7438 ATCTGCTCACGGCCGCGCACGTCCGGCAGCGTCACGTAGACCTGACGGTCGAAACGGCCA 7379 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 ||||| | || ||| || ||||| ||| ||||| ||||| || || || | || Sbjct 7378 GGGCGCAACAGCGCGGGATCCAGGATGTCAGGACGGTTGGTCGCGGCCATCACGATGACA 7319 Query 14138 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 14197 || | | | || ||||| |||||||| || | || |||| ||| || ||||| Sbjct 7318 CCAAGATTGGTGTCGAAGCCGTCCATCTCCACCAGCATCTGGTTGAGGGTCTGCTCGCGC 7259 Query 14198 TCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255 ||||| || | || ||| || |||| ||| || ||||| ||||| || |||| Sbjct 7258 TCATCGTTGCC--GCCGCCCAGGCCGGCACCGCGATGGCGGCCGACCGCGTCGATCTCAT 7201 Query 14256 CGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTC 14314 ||| ||| | ||| || || | | ||| || | || | || || || ||||| | Sbjct 7200 CGACGAAGATGATGCAAGGCGCACTCTTCTTGGCCTGCT-CGAACATGTCGCGCACGCGG 7142 Query 14315 TTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 14373 || || || || || |||||||| || || | || | | || || | || ||| || Sbjct 7141 GCCGCGCCCACGCCGACGAACATCTCGACGAAGTCGGAGCCCGAG-ATCGTGAAGAACGG 7083 Query 14374 GACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCC 14433 || || | || || |||||||| ||| || || ||||| |||||||| || || Sbjct 7082 CACCTTCGCCTCGCCAGCGATGGCCTTGGCCAGCAGCGTCTTGCCCGTCCCCGGAGGTCC 7023 Query 14434 TGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTTGTT 14492 | || || | || || ||||| | | |||| | || | | | | | || | | Sbjct 7022 GACCAGCAGCACGCCGCGCGGGATGCGGCCACC-CAGCTTCTGGAACTTCTGGGGATCCT 6964 Query 14493 TAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCG 14536 | ||||||||||| | || | | || |||||||| ||||| Sbjct 6963 TCAGGAAGTCCACCAGCTCCTTGACCTCTTCCTTCGCTTCGTCG 6920 >seq1445 Length=178852 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 179954 ACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAA 180013 |||| ||||| || || || ||||| | | ||||| ||||| ||| | ||||| || Sbjct 43730 ACTTACCACGAAGCGGAAAAACACCCCAATTGTCACGGCCAACAACACTTAAACCAGAAA 43671 Query 180014 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTG 180073 | || | | ||| || ||||| || ||||||| ||||||||||||||| | | || Sbjct 43670 CGGCCAAAGCCTTGGCTGAATCTCCTTCCGTCAAGATGAGCGTACACTTGGCGGCATGAC 43611 Query 180074 CCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 || || || ||||| ||||| || | |||| |||||| Sbjct 43610 GAGTACCGGCATTGTTGGCGTCATCAAGTTTGGAAATACC 43571 >seq1177 Length=179586 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 167954 TCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATCCAAGTTGGTGCGGGTGT 168013 |||| | || || | ||||||||||||| |||| |||| | || ||||| ||||| Sbjct 174392 TCGCATTGCCCCTCGTTCTGGACTCGCTGCCAAGAACTTTATCGACGTCGGTGCTGGTGT 174333 Query 168014 TGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCACACAGA 168073 |||||| |||||| ||| | |||| || | || ||||| | | | || || Sbjct 174332 AGTTGATGAAGACTACCGTGGTAACGTCACCGTAATCCTTTTCAACTTCAGCAAAACTGA 174273 Query 168074 TTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTAGAGAGGTGCGAGACGCC 168133 ||| || ||||||||||| ||||| |||||| | |||| || | | | | | | Sbjct 174272 TTTTGTCATTAAAAAGGGGGACCGCATTGCGCAATTGGTCTTGGAAAAGATTGCCATGGC 174213 Query 168134 CCAAGTTGAGGAAATTGGTGCGGTTGAGGAGACCGAGAGAGGTTCAGGTGGATTTGGTTC 168193 |||||||| |||| | || |||| || || | ||| | ||||| || ||||| Sbjct 174212 TCAAGTTGAAGAAACCGATGACCTTGACGAAACTATTCGTGGTGCCGGTGGTTTCGGTTC 174153 Query 168194 TACAGG 168199 ||| || Sbjct 174152 TACTGG 174147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418463597400