Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1301 208 9e-49 seq1342 129 7e-25 seq368 125 8e-24 seq1923 107 2e-18 seq1514 100 3e-16 seq645 98.7 1e-15 >seq1301 Length=515170 Score = 208 bits (230), Expect = 9e-49 Identities = 1052/1658 (63%), Gaps = 55/1658 (3%) Strand=Plus/Minus Query 104307 AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTAC--ACCAAGACCCCA 104364 || |||| || | ||||| |||| ||||||||| |||| ||||| | || || || Sbjct 333123 AAAGTATTTT-ACTCACGGTTCACCCACCCTCTTCCATGCCGGTACTAATCAT--CCTCA 333067 Query 104365 AATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAAC 104424 | |||| ||||||| | | | | || ||||| || | ||||| |||| ||| Sbjct 333066 ACTGTCTTCTTGCTTCTTGTTGACGATGTCTGATGACTCGATTGATGGTATTTATGAAAC 333007 Query 104425 TCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGA 104484 | | | | ||||| || || || | ||||| |||||||| || |||| || | Sbjct 333006 TTTAAAGACTTGTGCTTTGATTTCCAAATCTGCTGGTGGTATTGGTTTGAACATTCACAA 332947 Query 104485 TGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCC 104544 | | || | || ||| || || ||||||||||| ||||| || |||| Sbjct 332946 CATTCGTGCTGCTGGTTCGTACATTTCTGGCACGAATGGTCAATCCAATGGTCTTGTTCC 332887 Query 104545 AATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCG 104598 |||||||| || | || ||| || || || || |||||| ||| ||||| Sbjct 332886 CATGCTTCGTGTTTACAATAACACGGCTCGTTACGTTGATCAAGGTGGTAATAAGCGTCC 332827 Query 104599 AAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 104658 ||| || | || ||||| | || || |||||||| || | | || || | || Sbjct 332826 ---GGGTGCTTTTGCCGTCTACTTGGAACCGTGGCACGCTGACGTTTTTGACTTTTTGGA 332770 Query 104659 GTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCT 104717 ||| ||| || | || || | || ||| || || | |||| ||| | | Sbjct 332769 TTTGAAGAAGAACACTGGGAAGGAAGAAGTTCG-TGCTCGTGACTTGTTCTATGCTTTGT 332711 Query 104718 GGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTC 104777 ||||| ||| | ||||||||| | ||||| | | | ||||| ||||| || | Sbjct 332710 GGATTAATGATTTGTTCATGAAGCGTGTTGAAGCTGACGAAGACTGGTCCCTCTTCTGCC 332651 Query 104778 CAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAA 104837 || | | |||||| | || |||| ||||| || |||||||| |||||| | Sbjct 332650 CAAATGAATGTCCTGGTTTGTCTGATGTTTGGGGTGCTGAATTTGAAGCTCTTTACGAGA 332591 Query 104838 AGTACGAGGAAGAAGGTCGGGCGACTGCGACG----GTGCCAGCTGCCGATGTGTGGAAA 104893 ||||||| | ||||||| || || || || | ||| | | ||||| Sbjct 332590 AGTACGAAAATGAAGGTCATGCT----CGTCGTGTTGTTCGTGCTCAAAAGCTTTGGAAT 332535 Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 |||||| | | |||||| || |||||||| || |||||||| ||||| || || || Sbjct 332534 GCTATTTTGGAATCTCAAGTTGAAACTGGTACTCCTTACATGCTGTACAAGGATGCTTGC 332475 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 || ||||| |||||| | || ||||| ||||| |||||||| | ||||| ||| Sbjct 332474 AATTCCAAGAGCAATCAACAAAACTTGGGAACCATCAAATGTTCCAATTTGTGTACTGAA 332415 Query 105014 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073 || | |||| | | ||||||| ||||| || || | || || || ||| | Sbjct 332414 ATTGTTGAATACTCGGCTCCTGATGAGATTGCTGTTTGCAATTTGGCTTCTATTGCTTTG 332355 Query 105074 CCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133 || | ||| | || | || || ||||||| || || | | | ||| | Sbjct 332354 CCTGCCTTTGTCAAG---GATAAGAACACTTTTGATTTCAAAGAATTGAAACATGTTGCC 332298 Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACT 105193 || ||||||||| ||| | || | | ||||| |||| |||||| ||||| Sbjct 332297 AAGGTTGTCACCAAGAACTTGAATCGTATCATTGACGTCAATTATTACCCAGTTGAACAG 332238 Query 105194 GCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGAT 105253 |||||| ||||||||| | || ||||| |||||| | || ||||| || | || ||| Sbjct 332237 GCTCGTCGTTCTAATATGCGTCATCGTCCCATTGGTATTGGAGTTCAAGGATTAGCTGAT 332178 Query 105254 GTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGG--AAATCAATGCGC 105311 | |||||||| || ||||||||| || | ||| | || | ||| || Sbjct 332177 GCTTTCATTCTGATGCGAATGCCATTTGATTGTGA--ACGCGCTCGTCAATTGAATAAGC 332120 Query 105312 GCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTG 105371 || ||||||||||| || | | || | || || || || ||||| | ||| Sbjct 332119 AAATCTTTGAGACCATCTACTATGGTGCCTTGGAAGCTTCTTGTGAATTGGCTCAAATTG 332060 Query 105372 ATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGAT 105430 | || | ||| |||| | |||| || | | |||||| || | |||| ||| Sbjct 332059 AAGGACACTATCAAACTTACCCGGGTAGCCCTG-TGAGCAAGGGTGTTTTGCAATATGAC 332001 Query 105431 ATGTGGGAAGGTGAGACCAAGCTTC--ACTAC---GACTGGGAAGCTCTCAAGGAACGCA 105485 |||||| | || |||| |||| ||| || ||| |||| | |||| | Sbjct 332000 ATGTGGAA---TGTGACCC--CTTCCGACTTGTGGGATTGGTCAGCTTTGAAGGCTAAGA 331946 Query 105486 TCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCG 105545 | || | ||| ||||||| | | | ||||| ||||| || || || ||| Sbjct 331945 TTTCTGAACATGGTGTTCGTAATTCCTTGTTACTTGCTCCCATGCCGACTGCTTCTACCT 331886 Query 105546 CACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAA 105605 | ||||| | ||| | |||||||||||||| || | ||| | ||||| || | Sbjct 331885 CTCAAATTCTTGGTTACAATGAATGCTTTGAGCCTTTCACTTCCAACATTTACACTCGTC 331826 Query 105606 GAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGA 105665 | | || || || || |||||||| | | | || | || | | || Sbjct 331825 GTGTTTTAGCTGGTGAATTCCAAATTGTCAATCAATACTTGATGAAGGATTTGACTGAAT 331766 Query 105666 TTGGTCTCTGGTCCAAGGAT--ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCA 105723 | || | ||| | | || |||||| ||| ||| | ||||||||||| | || Sbjct 331765 TGGGATTGTGGA--ATGAATCCATGAAGAATCGCATCATTGCTGCGGGTGGTTCAGTACA 331708 Query 105724 AAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAAT--- 105780 ||| ||| || || | ||| | ||| | |||||| |||||||||||||| Sbjct 331707 AAAGATTCCCAGCATCCCGCAAGAATTGAAGGACTTGTACAAGACAGTTTGGGAAATTTC 331648 Query 105781 -CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTC 105839 ||| || | | |||||| |||| || ||||||||| |||||||||||||||| Sbjct 331647 TCAA----AAAGTCATTATTGACTTGGCTGCTGATCGTGGTGCTTTCATTGATCAAAGTC 331592 Query 105840 AAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGT 105899 ||||| |||| | ||| | ||||| | || ||| | |||| ||||| | | Sbjct 331591 AAAGTTTGAACATTCACATTGCCGAACCAACCTTTTCGAAGTTGACTTCAATGCATTTTT 331532 Query 105900 ACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || |||||||| ||| | || || || ||||||||| Sbjct 331531 ACGGTTGGAAGCTTGGTTTGAAGACTGGTATGTATTAC 331494 >seq1342 Length=132421 Score = 129 bits (142), Expect = 7e-25 Identities = 232/333 (70%), Gaps = 7/333 (2%) Strand=Plus/Plus Query 104532 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTG 104591 |||| || ||||||||| | ||||| ||||| | ||| ||||| || || |||||| || Sbjct 2022 ATGGCATCATTCCAATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATCAAGGTG 2081 Query 104592 GGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGG 104648 | | || || || || | || ||||||| ||||| |||||||| ||| | | | Sbjct 2082 GCGGGAAACGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTGTTTG 2141 Query 104649 AGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTC 104707 | || || |||||||| ||||| || ||||| | || ||| || ||| | || Sbjct 2142 AATTTCTAGAGTTGCGGAAAAACCACGGCAACGAGTTGCATCG-TGCTCGGGATTTGTTT 2200 Query 104708 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 104767 | || | ||| | ||||||||||| |||||| | || || | | ||||| ||| | Sbjct 2201 TTTGCCTTGTGGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGT 2260 Query 104768 CTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG-ATGCCGTGGGTGAGGAGTTTGAAGC 104826 ||||||||||| || | || || ||||| | || ||| | |||||| | |||||| | Sbjct 2261 CTCTTTTGTCCCAACGAAGCGCCGGGTCTGTACGAATGTTG-GGGTGACGCGTTTGAGAC 2319 Query 104827 CCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 | | ||| ||||||| | ||||| || || Sbjct 2320 CTTGTACGTCCAGTACGAACAGGAAGGCCGTGC 2352 >seq368 Length=262043 Score = 125 bits (138), Expect = 8e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCG 94808 || |||||| | |||||| ||||||||| ||| || | || | ||||| | | || || Sbjct 28495 AAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTC-TTCCTATCCAGAACG 28437 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 || || || ||||| ||||| || || || |||||||| || |||||| | || | Sbjct 28436 GCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCCATCTT 28377 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||||||||||||||| ||| | ||||| ||||| |||| || ||||||||||| || Sbjct 28376 TTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCG 28317 Query 94929 TGACGAGGGACTCCACCAAGAGTTTGCG 94956 |||||||| | ||| || |||||| Sbjct 28316 GGACGAGGGTATGCACACGGACTTTGCG 28289 >seq1923 Length=74424 Score = 107 bits (118), Expect = 2e-18 Identities = 251/375 (67%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| || |||||||| | | || | ||| || | ||| | || || ||||| Sbjct 15136 ACGGTCAAAACGGCCTGGACGCAACAAAGCCTTATCCAGAACATCGGCACGGTTAGTCGC 15077 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 ||||| || | | || | | |||||||||||||| || || | |||||| Sbjct 15076 TGCGATAACGATCACGCCAGAATTTGGCTCAAAACCATCCATTTCCACCAGCATTTGGTT 15017 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTT 9696 || |||||||| || ||||| || | ||||||| |||| || || Sbjct 15016 AAGTGTTTGTTCACGCTCATCGTTACC------ACCACCAGTGCCCGCACCACGGTGACG 14963 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGACT 9754 ||| || ||||||||||||||||| || | ||| || | | || |||| | || Sbjct 14962 TCCTACCGCATCAATCTCATCAATAAAAATGATACAAGGCGATGCTTTTTTTGCCTGA-- 14905 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||||| | ||| || ||||| ||| || |||||||||||||| || || || | || Sbjct 14904 TCAAACATATCACGCACACGTGCGGCACCGACACCAACAAACATTTCAACGAAATCTGAA 14845 Query 9815 GCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | || | | | | ||| || || |||| ||||| ||||| ||| || || | ||| Sbjct 14844 CCTGAGATAGT-AAAGAACGGCACTTTAGCCTCACCTGCAATCGCTTTAGCCAGCAAAGT 14786 Query 9874 CTTACCCGTACCTGG 9888 ||||| || ||||| Sbjct 14785 TTTACCTGTGCCTGG 14771 >seq1514 Length=149957 Score = 100 bits (110), Expect = 3e-16 Identities = 326/496 (66%), Gaps = 19/496 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || |||||||| || |||||| || ||| ||| || | || | |||||| ||||| Sbjct 146225 CGGTCAAAGCGCCCCGGACGACAAAGTGCGGGATCGAGTACTTCTAGGCGATTTGTCGCT 146284 Query 9584 GCGATGACAA-CAATACCTG----TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9638 || | |||| || | | | |||| || |||| |||||||| |||||||| | | Sbjct 146285 GCAAGCACAATCACTCCATTAGCCTTTCCTT--CAAACCCATCCATTTCTGTCAACAACT 146342 Query 9639 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 9698 | || | || ||||| |||||||| || | || || ||| ||| | ||| Sbjct 146343 GATTGAGCGTCTGTTCTCGTTCATCGTTTGAATTGATTCCGCCAC----GCGCT--TTTG 146396 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756 ||| ||||||||||||||||| || ||||| || | ||| | |||| | || | Sbjct 146397 CCAGCGCATCAATCTCATCAATAAAAACGATACACTG-TGAGTACTGCGA-TGCCTGCGT 146454 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 |||||| |||||||| || || || ||| || | |||||| ||||||| | || Sbjct 146455 AAAGAGGTCCCGTACTCGAGCTGCACCGCGACCCACTAGCATCTCGACAAAGTCCGATGC 146514 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 || || || || | || | ||| || | |||||||||||||||||||| Sbjct 146515 CGAGCAAAAGAGAAATGCTACGCCTGCTTCGGAGGCTACTGCTCGGGCGAGAAGAGTCTT 146574 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 || || |||| || || || | ||| ||| | ||||| ||| | | Sbjct 146575 GCCTGTTCCTGAAGGTCCACAAAGCAGCACGCCTTTTGGGACTTTGGCTCCAATGGCTTG 146634 Query 9937 GTATCTCTCAGGTTG-CTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995 |||| | | || || | ||| ||| || |||| ||| ||||| || | ||||| ||| Sbjct 146635 GTATTTTGCTGGATGTCGTAA-AAAGTCAACAACTTCCTCCAACTCTTTCCTGGCGCCGT 146693 Query 9996 CAATCCCCTCAACATC 10011 | || || | ||||| Sbjct 146694 CGATGCCGGCCACATC 146709 >seq645 Length=162377 Score = 98.7 bits (108), Expect = 1e-15 Identities = 250/372 (67%), Gaps = 19/372 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || |||||||| || |||||| || ||| ||| || | || | |||||| ||||| Sbjct 124827 CGGTCAAAGCGCCCCGGACGACAAAGTGCGGGATCGAGTACTTCTAGGCGATTTGTCGCT 124768 Query 9584 GCGATGACAA-CAATACCTG----TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9638 || | |||| || | | | |||| || |||| |||||||| |||||||| | | Sbjct 124767 GCAAGCACAATCACTCCATTAGCCTTTCCTT--CAAACCCATCCATTTCTGTCAACAACT 124710 Query 9639 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 9698 | |||| || ||||| |||||||| || | | |||||| ||| ||||| Sbjct 124709 GATTAAGCGTCTGTTCTCGTTCATCGTTTGAATTGAGTCCACCAC----GCG---CTTTC 124657 Query 9699 -CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC- 9756 ||| |||||||||||||| || |||||||| || | ||| | |||| | || | Sbjct 124656 GCCAGCGCATCAATCTCATCGATAAAGACGATACACTG-TGAGTACTGCGA-TGCCTGCG 124599 Query 9757 -AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 |||||| |||||||| || || || ||| || | |||||| ||||||| | | Sbjct 124598 TAAAGAGGTCCCGTACTCGAGCTGCCCCGCGACCTACTAGCATCTCGACAAAGTCCGATG 124539 Query 9816 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 | || || || || | || | ||| || | ||||| ||||||||||||| Sbjct 124538 CCGAGCAAAAGAGAAATGCTACGCCTGCTTCGGAGGCTACTGCTCGAGCGAGAAGAGTCT 124479 Query 9876 TACCCGTACCTG 9887 | || || |||| Sbjct 124478 TGCCTGTTCCTG 124467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583245015504600