Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq368 185 1e-41 seq1342 147 2e-30 seq1439 134 2e-26 seq312 118 1e-21 >seq368 Length=262043 Score = 185 bits (204), Expect = 1e-41 Identities = 376/546 (69%), Gaps = 13/546 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||| |||||| | | ||||| | || || | || | Sbjct 28830 TGTACAAGAAAGCTGAAGCTTCTTTCTGGACAGCTGAGGAACTCGATCTGGTGCACGATC 28771 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 |||| ||||||| | |||| || |||||| ||||||| ||| || || || | Sbjct 28770 TGAAAGATTGGGCTAGCCTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTT 28711 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || || ||||| || || |||| |||||| ||| |||||| ||| ||| || | Sbjct 28710 TCTTTGCTGCTAGTGACGGCATCGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAG 28651 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTATCCA 59830 | ||| | | ||||| || | || |||| || ||| ||| ||| |||| ||| || Sbjct 28650 TGCAGGTGCCAGAGGCTCGCTGCTTTTACGGGTTTCAAATCG--CAATCGAGAATATACA 28593 Query 59831 CTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGG 59890 ||| || ||||||||| |||| || | || |||| || || ||||||| Sbjct 28592 CTCGGAAGTGTACTCGCTTTTGATTGACACGTATATCAAAGACGCGATTGAGAAGGACCA 28533 Query 59891 TCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 ||| | ||||| || ||||| |||| || || | ||||||| | ||||| || Sbjct 28532 TCTACTACGTGCTATCGAGACTATCCCTTGC-GTCACCAAAAAAGCGCACTGGGCTCTGA 28474 Query 59950 AGTGGATGAG-TCCTGGAG---CATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GT 60004 ||||| || | ||| | | | || | | || |||| || | || ||||| ||| || Sbjct 28473 AGTGG-TGCGATCCACGGGTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGC-TGCAGT 28416 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 ||||| || || ||||||||||| ||||| | || || |||||||| ||||| || | Sbjct 28415 TGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTT 28356 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGA 60124 ||||| || || || || || |||||||| ||| |||||||||||| | || ||| Sbjct 28355 AATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCGGGACGAGGGTATGCACACGGA 28296 Query 60125 GTTTGC 60130 ||||| Sbjct 28295 CTTTGC 28290 >seq1342 Length=132421 Score = 147 bits (162), Expect = 2e-30 Identities = 242/340 (71%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || ||| ||||| || |||| ||||| ||| || | || || ||| | ||| Sbjct 2233 CTTCATAAAGAGATCTGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTC 2174 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 || ||| ||||| |||| ||| ||||| || | | || |||||||| ||||| || Sbjct 2173 GTTGCCGTGGTTTTTCCGCAACTCTAGAAATTCAAACACATCAGCGTGCCAGGGCTCTAG 2114 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 ||||||||| ||||| || ||||| || ||||| || || | ||||||||| ||||||| Sbjct 2113 ATAGATGGCAAACGAGCCTTTGCGTTTCCCGCCACCTTGATCGACGTACCGCGCCGTGTC 2054 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCC-GTCGGCGACGCCGTTCGTCCCGTTGAT-T 79617 || || || || | ||| || | |||||| ||| |||| |||||||| || ||| | Sbjct 2053 ATTAAAGACGCGCAACATTGGAATGATGCCATTCGACGAC-CCGTTCGTGCCTCGGATGT 1995 Query 79618 CG-TGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGG 79675 | ||| | | || |||||||| | ||| ||| ||||| || |||| ||| || | Sbjct 1994 AGCTGT--TGGTGGCACGAATGTT-GTGCATACTGATCCCGATCCCGCCGGCCCATTTCG 1938 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC 79715 | ||| ||| || | ||||||||| || || ||||| || Sbjct 1937 AAATGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTC 1898 >seq1439 Length=156656 Score = 134 bits (148), Expect = 2e-26 Identities = 256/374 (68%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 79438 TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCC 79497 |||||||| |||| ||||||||||| || ||| |||||| |||||||| |||| Sbjct 121455 TCGTCGCCGGTGTTCTTGCGCAGCTCGAGGAATTCCTCGATGTCCAGGTGCCACGTCTCC 121396 Query 79498 AGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTG 79557 || ||| | || | ||||||||||||| |||||||||| ||| ||||||| Sbjct 121395 AGGTAGGCGCAGACGGCGCCCTTGCGCTTGC---CGCCCTGGTTCACGGCGACGGCCGTG 121339 Query 79558 TTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC--GCCGTTCGTCCCGTTGA 79615 | ||||| || || | || |||| ||| | ||||| ||||||||| || |||| Sbjct 121338 TCGTTGACCACCTTCAGGAACGGGACGACGCCTT--GCGACTTGCCGTTCGTGCCCTTGA 121281 Query 79616 TTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGG 79675 | | | ||| ||| || | | |||| | | |||| ||| |||| |||| | Sbjct 121280 TGTGGGAACCCAGCGCGCGCACCGGGGTCCAGTCGTTGCCGAGGCCGCCGGCGAACTTCG 121221 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAG 79735 | | ||||| ||||| |||| |||||||||||| || | |||||| || | Sbjct 121220 ACAGCAGCGCGTTTTCCTTCAGCGCCTCGTAGATGCCGTC---CAGGTCGTCGGCCACGG 121164 Query 79736 CGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCG 79795 |||| |||||||||||| ||| | | | ||| || | |||||| || ||||||| Sbjct 121163 TCGTCAGGTAGCAGCTCGACAGCTGCGAGCGGCGCGTGCCCGAGTTGAACAGCGTCGGCG 121104 Query 79796 TCGCGTGCGTGAAG 79809 | | | | ||||| Sbjct 121103 TGGAGCTCATGAAG 121090 Score = 118 bits (130), Expect = 1e-21 Identities = 338/514 (66%), Gaps = 12/514 (2%) Strand=Plus/Plus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 ||||| | | | |||||||| || |||||| | || ||| | | ||||| ||||||| Sbjct 121090 CTTCATGAGCTCCACGCCGACGCTGTTCAACTCGGGCACGCGCCGCTCGCAGCTGTCGAG 121149 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 ||| | ||| | | || || ||| | || |||||||||||| |||| ||||| Sbjct 121150 CTGCTACCTGACGACCGTGGCCGACGACC---TGGACGGCATCTACGAGGCGCTGAAGGA 121206 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTC 19374 ||||| | || |||| |||| || |||| | | |||| | | || | Sbjct 121207 AAACGCGCTGCTGTCGAAGTTCGCCGGCGGCCTCGGCAACGACTGGACCCCGGTGCGCGC 121266 Query 19375 GAGTGGTACACGAATCAATGGGACGAACGG--AGTAGCCGACGGTATCGTCCCAATGCTC 19432 | ||| | | ||||| || |||||||| ||| || | || ||||||| | || Sbjct 121267 GCTGGGTTCCCACATCAAGGGCACGAACGGCAAGTCGC--AAGGCGTCGTCCCGTTCCTG 121324 Query 19433 CGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCG 19492 || ||||| |||||||| ||| ||||| ||||||||| ||||||||| | Sbjct 121325 AAGGTGGTCAACGACACGGCCGTCGCCGTGAACCA---GGGCGGCAAGCGCAAGGGCGCC 121381 Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || | |||||| ||| | |||||| |||| || ||| |||||||| |||||| | Sbjct 121382 GTCTGCGCCTACCTGGAGACGTGGCACCTGGACATCGAGGAATTCCTCGAGCTGCGCAAG 121441 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| || ||||| ||| | |||| | |||||| |||||||| ||| Sbjct 121442 AACACCGGCGACGACCGTCGCCGCACGCACGACATGAACACGGCGAACTGGATTCCCGAC 121501 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGA-ATG 19671 || |||||| || || ||| || || ||| ||| | ||||| ||| || Sbjct 121502 CTGTTCATGAAGCGCGTGATCGAGGGCGGCGAGTGGACGCTGTTCAGCCCG-TCGACCTG 121560 Query 19672 CCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||| | ||| | |||| | | |||| |||| ||| Sbjct 121561 CCCGGACCTGCACGACCTGTTCGGCAAGGCCTTC 121594 >seq312 Length=309945 Score = 118 bits (130), Expect = 1e-21 Identities = 195/277 (70%), Gaps = 11/277 (4%) Strand=Plus/Plus Query 20252 GGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATG 20311 || |||||||||||||||||||||||||||||| | || ||| | || |||||| Sbjct 18852 GGTCCGTACGAGACGTTCAAGGGGTCGCCCGCGAGTCAAGGGATCTTTCAATTTGACATG 18911 Query 20312 TGGGGCGTCACTGAGAATGAG---TTTTGGA----GCGCC-CTCAAGGTTGAGATCAAGA 20363 ||||||||||| || | | | ||| ||| | || |||| || ||| | Sbjct 18912 TGGGGCGTCACGCGTCATCGGGCCTCTGGGATTGGGCGGCACTGAAGGAAAAGGTCATGC 18971 Query 20364 CCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGA 20423 || ||||| || |||||| | | |||||||||||||| || || |||||||| || | Sbjct 18972 AGCATGGGCTCCGGAACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAA 19031 Query 20424 TCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC--TTGCGTCGTAC 20481 || |||| |||||||| | | ||||| | ||| ||||||| ||| | || ||| | Sbjct 19032 TCTTGGGCAACAACGAATCGATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCGT-C 19090 Query 20482 ACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTG 20518 ||| || ||||| || ||||||||| | ||| Sbjct 19091 TTGGGCTGGCGAGTTTACGATCGTAAACAAGTATCTG 19127 Score = 118 bits (130), Expect = 1e-21 Identities = 177/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTC-CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||||| ||| | | ||||| ||| ||||||| ||| | ||||| | | || Sbjct 19105 AACTCGCCAGCCCAAGACGCGGCGATTGTACATGTTGGACGTAAAGGGCTCAATCGATTC 19046 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| ||| || |||||||| || || |||||||| ||||||| || || || Sbjct 19045 GTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGGGCGCGACCAAGAGCGAGTT 18986 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAG-GCCG-----TCCCAAAATTCATTCGC 78680 ||| || |||||| | ||| || |||| || |||| ||||| | | | Sbjct 18985 CCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGCCCAATCCCAGAGGCCCGATGA 18926 Query 78681 CGCG--ATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAAC 78738 |||| | ||||||||||| ||||| ||| || | ||| ||||||||||||||| Sbjct 18925 CGCGTGACGCCCCACATGTCAAATTGAAAGATCCCTTGACTCGCGGGCGACCCCTTGAAC 18866 Query 78739 GTCTCGTA 78746 |||||||| Sbjct 18865 GTCTCGTA 18858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509955547600