Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq368 143 3e-29 seq1301 132 5e-26 seq1445 116 4e-21 seq689 113 5e-20 seq412 107 2e-18 seq312 82.4 8e-11 >seq368 Length=262043 Score = 143 bits (158), Expect = 3e-29 Identities = 542/834 (65%), Gaps = 45/834 (5%) Strand=Plus/Plus Query 74457 TTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTC 74516 || || || || || || || || ||||||||||| ||||| || | | ||||| | Sbjct 27996 TTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTTGTCTTGCCCTGGAGAGAGATCATG 28055 Query 74517 TCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGCCA 74574 |||||||| ||||| |||||||||||| ||| || || | ||||| | | | | Sbjct 28056 TCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCC---AGCGAGTAA 28112 Query 74575 TG-AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATG 74633 | || ||||| |||||||||| ||||||| | ||| |||| | |||||| || Sbjct 28113 AGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCAATC 28172 Query 74634 AGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA 74693 || | | ||| || | || | ||||| || | |||| | ||| | | Sbjct 28173 AGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAA--TCGCCACAGCATCGCGAA 28230 Query 74694 --ATCTTGTGAATG---TCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGT 74746 || | ||| | | | || ||| || ||| || | ||||| || | Sbjct 28231 TGATTTCGTGCACGCGGTATTCTGGCAG----CTTGGTGACCAATTTGGAGTACAAAAGG 28286 Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 |||| |||| ||| ||| || || || | ||| || | || || ||||| || Sbjct 28287 CACG-CAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAG 28345 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 |||||||| | || |||||||| | ||||||||||| ||||| || ||| ||| || Sbjct 28346 ACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAA 28405 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGC---------GAACGGTGCATC 74917 |||||||| || |||||||| | ||| |||| | || | ||| ||| Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 28465 Query 74918 GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGAT 74977 | | ||| || ||||||| | |||||| |||| ||||| ||| ||||| Sbjct 28466 GCA------CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGAT 28519 Query 74978 CGCTTGGA--AGAGGCTTGCCTTCTCT-TCGGGATCCTTGACGAGCTTGTCAATCATAAG 75034 || | | ||| | | ||||||| ||| | || |||| | ||||||||| ||| Sbjct 28520 AGCACGTAGTAGATGGT--CCTTCTCAATCGCG-TCTTTGATATACGTGTCAATCAAAAG 28576 Query 75035 TGAGTACGTCTCCGAATGAATCGACTCG-TTGAACGACTGGTA-CGCGTAGAAAGACCGC 75092 |||||| ||||| || || |||| ||| ||| | | | | |||| || | || Sbjct 28577 CGAGTACACTTCCGAGTGTATATTCTCGATTG--CGATTTGAAACCCGTAAAAGCAGCGA 28634 Query 75093 GCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCG 75152 ||||||| | ||| || || || |||||||||| | | ||| || | ||||||||| Sbjct 28635 GCCTCTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACGATGCCG 28694 Query 75153 TCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT 75212 || || || || ||||| || || || || || | ||||| | ||| ||||| Sbjct 28695 TCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGG 28754 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | ||||||| ||||| || | ||| ||| | ||||| | ||||||||| Sbjct 28755 CTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAA 28808 >seq1301 Length=515170 Score = 132 bits (146), Expect = 5e-26 Identities = 341/512 (67%), Gaps = 8/512 (2%) Strand=Plus/Minus Query 53247 CGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTG 53306 ||||| | || ||||| ||||||| ||||| |||| | || ||||| ||| | || | Sbjct 333142 CGTACAATTTCATGAGTGAAAAGTATTTTACTCACGGTTCACCCACCCTCTTCCATGCCG 333083 Query 53307 GTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCG 53366 |||| ||||| ||||| |||| |||||| || || ||||| ||||||||||| | Sbjct 333082 GTACTAATCATCCTCAACTGTCTTCTTGCTTCTTGTTGACGATGTCTGATGACTCGATTG 333023 Query 53367 ACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG 53426 | || || || || || | ||| ||||| || ||||| | | |||||||| | Sbjct 333022 ATGGTATTTATGAAACTTTAAAGACTTGTGCTTTGATTTCCAAATCTGCTGGTGGTATTG 332963 Query 53427 GTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485 || | || | | | ||| | ||||| || | || || ||||| || Sbjct 332962 GTTTGAACATTCAC-AACATTCGTGCTGCTGGTTCGTACATTTCTGGCACGAATGGTCAA 332904 Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 || |||| | || || ||||| || || | ||| |||||||| || ||||| | || Sbjct 332903 TCCAATGGTCTTGTTCCCATGCTTCGTGTTTACAATAACACGGCTCGTTACGTTGATCAA 332844 Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 |||||| ||||| ||| | || ||| ||||| | || ||||||||||| ||| || Sbjct 332843 GGTGGTAATAAGCGTCCGGGTGCTTTTGCCGTCTACTTGGAACCGTGGCACGCTGACGTT 332784 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCT 53664 | || ||| | || || ||| || | ||||| | || ||| |||||| | Sbjct 332783 TTTGACTTTTTGGATTTGAAGAAGAACACTGGGAAGGAAGAAGTTCG-TGCTCGTGACTT 332725 Query 53665 GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAG 53722 ||| ||| |||||||| || | |||||| || ||| |||| ||||| || Sbjct 332724 GTTCTATGCTTTGTGGATTAATGATTTGTTCATG--AAGCGTGTTGAAGCTGACGAAGAC 332667 Query 53723 TGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754 |||| ||| | ||||| || || || || || Sbjct 332666 TGGTCCCTCTTCTGCCCAAATGAATGTCCTGG 332635 >seq1445 Length=178852 Score = 116 bits (128), Expect = 4e-21 Identities = 259/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 152778 CAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTA 152837 |||||| ||||||||||| |||||| | ||| |||||||||||||| ||||||||||| Sbjct 43909 CAAGCCTTTGATGTGCGAGCCGTCATGGTCCTGATCGGTCATGATCATGAGACGACCGTA 43850 Query 152838 GCGCAGG--TCACGTAGTGACCCGTAGACCTTTCCATGTTG-AAGCCCGAGGATCTTTTT 152894 || | | | ||| ||| ||| ||| ||||| || |||||| | || | || Sbjct 43849 ACGTAAGCTTTCCGT--TGAAGTGTACTGCTTGCCATGCTGTAAGCCC-ATAATTTGCTT 43793 Query 152895 GAGGTTGGA--AAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTG 152952 || || || || ||| |||| || | | || || || ||| || ||||||||| Sbjct 43792 GA--TTTGATTAATTTCGGCATTTTCCATGATTTGCTTATGCGAGGCTTCACGAACATTG 43735 Query 152953 CGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCG 153012 | ||| || || || ||||| || || | || ||||| ||||| || | ||| Sbjct 43734 AGTAACTTACCACGAAGCGGAAAAACACCCCAATTGTCACGGCCAACAACACTTAAACCA 43675 Query 153013 GCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGAC 153072 | || || | || || || || || || || || | || |||||||| | | | Sbjct 43674 GAAACGGCCAAAGCCTTGGCTGAATCTCCTTCCGTCAAGATGAGCGTACACTTGGCGGCA 43615 Query 153073 CGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTC 153132 || |||||||||| ||||||||| ||||| |||| || || | | | |||| Sbjct 43614 TGACGAGTACCGGCATTGTTGGCGTCATCAAGTTTGGAAATACCGGAAAGACGAGATTTC 43555 Query 153133 TTAGAGCCGTCGGTTTTCTTCA 153154 || | ||||| || ||||||| Sbjct 43554 TTGGCACCGTCAGTCTTCTTCA 43533 Score = 111 bits (122), Expect = 2e-19 Identities = 254/375 (68%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075 || ||||| || || ||||| | ||| ||||||||||||||| || || ||||| ||| Sbjct 43905 CCTTTGATGTGCGAGCCGTCATGGTCCTGATCGGTCATGATCATGAGACGACCGTAACGT 43846 Query 118076 AAATCTCTCAGG-GAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGGTT 118134 || || || | || | || ||| ||||| || | || | || | || | || Sbjct 43845 AAG-CTTTCCGTTGAAGTGTACTGCTTGCCATGCTGTAAGCCCATAATTTGCTTGA--TT 43789 Query 118135 GGA--AAATTCCTCATTTTCCGTCACCTGTTTTATG-GTGGCGTCCCGAACGTTGCGCGG 118191 || || ||| |||||||| | | || || ||| | ||| || ||||| ||| | Sbjct 43788 TGATTAATTTCGGCATTTTCCATGATTTGCTT-ATGCGAGGCTTCACGAACATTGAGTAA 43730 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251 |||||| || || ||||| || || | ||||||||||| ||||| || || || | || Sbjct 43729 CTTACCACGAAGCGGAAAAACACCCCAATTGTCACGGCCAACAACACTTAAACCAGAAAC 43670 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATG 118311 || | ||||| || || || || || || | || || || |||| || | || | Sbjct 43669 GGCCAAAGCCTTGGCTGAATCTCCTTCCGTCAAGATGAGCGTACACTTGGCGGCATGACG 43610 Query 118312 AGTACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGA 118371 ||||||||| || || ||||| || || | || || | || || || || |||| Sbjct 43609 AGTACCGGCATTGTTGGCGTCATCAAGTTTGGAAATACCGGAAAGACGAGATTTCTTGGC 43550 Query 118372 CCCATCTGTCTTCTT 118386 || || |||||||| Sbjct 43549 ACCGTCAGTCTTCTT 43535 Score = 104 bits (114), Expect = 3e-17 Identities = 201/292 (69%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAAT 117361 |||||||||||||||||| |||||||| || ||||| |||| ||| ||||| ||| Sbjct 44645 GAGTGAAAATGTAACGAGGTGAAGCAGCATCTTTACCACCTTGCAA-ACGAGTACCAAAT 44587 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 || || |||| || | | ||| | ||| ||| || |||||||||||||||||| Sbjct 44586 TGACCGTTCGGTTCAAGTAAGTTAATGTTATTGCTTCCAACAAAGTTTTGAGCCAAGCCA 44527 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | ||| || | ||| |||||| || ||||| || | || || || ||||| Sbjct 44526 ATAATGGTGGAACACAAGCTTTGCTCACCGTGATGATAAGCAGAGTGTTCTGCAACGTAA 44467 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTC--AGGTTCTTCTTGAGGCAGGCATAAA 117539 || || | ||||| | ||| || || || || | || ||||| ||||||| | | Sbjct 44466 CCGGCTAATTGAGCAATCTTGATTTC--ACTTCTTAATTTACGCTTGAAGCAGGCAAACA 44409 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 | | || || |||| ||||| | |||||| | | | ||||| ||||| Sbjct 44408 TGATTTTACGATGACCCGGCTTGAAACCATCAACAATGCTCGGGATTGAACG 44357 >seq689 Length=1406 Score = 113 bits (124), Expect = 5e-20 Identities = 204/293 (70%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||| ||| ||||||||| | |||| || || ||||| ||||||||||||||| Sbjct 1302 TGCTGCAGCATCAGCCACATGCCGCGGACATATTCGCGGGCGTGGCCCCAGTCGCGCTTG 1243 Query 124611 GCATCCAGGTTTCCGAGCTCGA--TTGGCTTGGCCGTCTTGTTCCA-CTCCGCCAAACCC 124667 || || || || ||||| | || ||| | ||| | | || | | | |||| | | Sbjct 1242 GCGTCGAGATTGCCGAGATAGAGCTTGTCCTGGAAGCCCTGCTTGATCGCCGCGACGGCG 1183 Query 124668 AGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724 | || |||||||| || || || |||| |||| || | ||||||||||||| Sbjct 1182 CGGGTGATCTTGCGGGTGACGAAGGTCTCGCC-CCGCAGCGGGCT--CTCGTGGTTGAAC 1126 Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 || ||||| | | || || || || | |||||||||||| | ||||| || Sbjct 1125 AGGATGCCGTTGCTGGCGTGGATGCCATAGGCCTCGCGGTAGTTGACCACGATCCAGTAG 1066 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||| ||||||||| || | |||||||| || || ||||| ||||| || || Sbjct 1065 CCATAGAGCTTGGCGGCGGCGTAGGGGCTGCGCGGATAGAAGGGGGTCTTCTC 1013 >seq412 Length=287632 Score = 107 bits (118), Expect = 2e-18 Identities = 231/340 (68%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 151896 ACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCCGGCTCCACCTGTTGACC 151955 ||||||||| || | ||| || | ||| || ||| | || || || | | |||||| Sbjct 72848 ACCGTTGACAAGCACCATGGGAATAATTGGAATGTACCATTCGGGTTCAATCGATTGACC 72789 Query 151956 GTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGATCGAATATCCGTCGAGTCAT 152015 ||| || | || || |||||| ||||| | |||||| | ||| || |||| Sbjct 72788 GTCCTCAACCAGATACTTCAAACAATCGTTGTCCGAAGGATCGTAAATCACGCGTGTCAG 72729 Query 152016 AGGACTCAAACGC-GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCC 152074 | ||| || ||||| ||||| |||| |||||||| |||||||| || | | Sbjct 72728 CTG-CTCTAAGTTAGTGAAAATGTAACGGGCACTGGCCGCGTCCTTGCCTCCCATTAAAC 72670 Query 152075 GCGTTCCAAACTGTCC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTC 152133 | || ||||| || || | ||| | || || | || |||||| || || || | | Sbjct 72669 GAGTACCAAATTGGCCGATCGGGGAC-AGAAGATGGATATTGTTGCTACCAACAAAGTCC 72611 Query 152134 TGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGC 152193 || |||| ||| ||||| ||||| | |||| |||||||| || || || | ||| Sbjct 72610 TGTGCCATATTGACAATACATCCCTGTAAACTCTGCTCACCGTGATGGTAAGCAGAGTGC 72551 Query 152194 TCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 || | || ||| ||||||||||| ||||| || || |||| Sbjct 72550 TCAGAGACGTAACCCGCCAACTGTGCCACTTTGATCTCCG 72511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||||||||| | || || || |||||||| || | ||| ||||| ||||| Sbjct 72716 AGTGAAAATGTAACGGGCACTGGCCGCGTCCTTGCCTCCCATTAAACGAGTACCAAATTG 72657 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || |||| || || | | |||||| || ||||||| || |||| ||||| Sbjct 72656 GCCGATCGGGGACAGAAGATGGATATTGTTGCTACCAACAAAGTCCTGTGCCATATTGAC 72597 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || || | ||| |||||| || || || || | ||||| | ||||| || Sbjct 72596 AATACATCCCTGTAAACTCTGCTCACCGTGATGGTAAGCAGAGTGCTCAGAGACGTAACC 72537 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| ||| ||||| || || || ||| Sbjct 72536 CGCCAACTGTGCCACTTTGATCTCCGAC 72509 >seq312 Length=309945 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || || ||||| || | || ||||| ||||| || |||||||| ||||| ||| || Sbjct 18977 GGGCTCCGGAACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTG 19036 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 ||||||||||| || | ||||| | ||| ||||||| ||| ||||| Sbjct 19037 GGCAACAACGAATCGATTGAGCCCTTTACGTCCAACATGTACAATCGCCG 19086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201190967000