Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1775 172 6e-38 seq1355 158 1e-33 seq1110 141 1e-28 seq1422 134 2e-26 seq1445 120 3e-22 seq368 107 2e-18 seq1525 96.9 4e-15 seq312 89.7 6e-13 >seq1775 Length=332822 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || || |||||||| ||||| || || || ||| | Sbjct 274771 AATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCCTC 274830 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||||||||| ||| | || ||||||||||||||||| || ||||| || ||||| Sbjct 274831 GGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGACCA 274890 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| ||||| |||| || || | |||||||| || Sbjct 274891 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTACAA 274950 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || ||||| || || || || || |||||||| || || || Sbjct 274951 TATTCAGAAAGAATCGACGCTGCACCTCGTGTTGCGTCTGCGTGGCGG 274998 >seq1355 Length=184863 Score = 158 bits (174), Expect = 1e-33 Identities = 176/233 (76%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||| |||||||| || || ||||| || ||||| || || ||| | Sbjct 91344 TACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCC 91285 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | ||| || | || ||||| || |||||||||||||| |||||||| || || Sbjct 91284 ATCTGACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGA 91225 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT--AGCAGAC 27579 |||||| ||||||||||||||||| ||||| | ||||| | |||| | | ||| ||| Sbjct 91224 CCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGC-GAC 91166 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||| ||||| || || ||||| || || |||||||| || || || Sbjct 91165 TACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGG 91113 Score = 152 bits (168), Expect = 6e-32 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || ||||||||||||||||| |||||| | Sbjct 90654 ATGCAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGAG-CTTCC 90596 Query 27466 GATAGCATTGCAAATTTGAAGGCTAA--AATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || || | || | |||| || |||| |||||||||| |||||||| || |||| Sbjct 90595 GACTCGATCGACAAGT-GAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACC 90537 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTAT 27582 |||| ||||||||||||||||| ||||| | ||||| | ||||| || ||| ||||| Sbjct 90536 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGC-GACTAC 90478 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| || || || |||||||| || || ||||| || || |||||| Sbjct 90477 AACATCCAGAAAGAGTCGACTCTTCACCTTGTGTTGCGCCTGCGTGGTGGA 90427 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || || ||||| || |||||||| |||||| | Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || |||||||||||||| |||||||| || |||||| Sbjct 90822 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90763 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||||||||||||||| ||||| | ||||| | ||||| || ||| ||||| || Sbjct 90762 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGC-GACTACAA 90704 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || |||||||| || || || Sbjct 90703 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGG 90656 Score = 145 bits (160), Expect = 9e-30 Identities = 172/229 (75%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || || ||||| || |||||||| |||||| | Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || |||||||||||||| |||||||| || |||||| Sbjct 91051 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90992 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||||||||||||||| ||||| | ||||| | ||||| | ||| ||||| || Sbjct 90991 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGC-GACTACAA 90933 Query 27585 TGTCCA-AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||| || || ||||| || || |||||||| || || || Sbjct 90932 CATCCAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGG 90884 >seq1110 Length=486086 Score = 141 bits (156), Expect = 1e-28 Identities = 148/193 (77%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||| || |||||||||||| | || |||||||| ||||| || || || || |||| Sbjct 256103 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 256162 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 256163 ---GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAC 256219 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||| | || |||||||| |||||||| || |||| ||| | || || ||||| Sbjct 256220 CAGCAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTAC 256279 Query 27583 AATGTCCAAAAGG 27595 || | ||||||| Sbjct 256280 AACATTCAAAAGG 256292 >seq1422 Length=277306 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | || || ||||| ||||| || || || ||| | Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | ||| | ||| || || ||||||||||| || ||||| || || ||| Sbjct 271383 GATTCGATCGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAG 271442 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| |||||||| | |||||| | || ||||| ||| Sbjct 271443 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAAT 271502 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | ||| | ||||| || Sbjct 271503 ATTCAGAAGGAGTCTACGCTCCACCTGGTACTTCGTTTGCGCGGAGG 271549 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || || || ||||| || ||| | || || || | Sbjct 271094 AATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTC 271153 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || || | || | ||| || || ||||||||||| |||||||| || || || Sbjct 271154 GGACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCA 271213 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| |||||||| | |||||| | || ||||| || Sbjct 271214 GCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAA 271273 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| | || || || || || | ||| | ||||| || Sbjct 271274 TATACAGAAGGAGTGTACGCTCCACCTGGTGCTTCGTTTGCGCGGAGG 271321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || || ||||||||||| || |||||||| ||||| |||||||| | |||||| Sbjct 271756 ATTCCACCTGATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACT 271815 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | || ||||| ||| | || ||||| || || || || || || | ||||| || || Sbjct 271816 TTGGCTGACTACAATATACAGAAGGAGTCTACGCTCCACCTGGTGCTTCGTCTACGTGGC 271875 Query 27631 GGA 27633 ||| Sbjct 271876 GGA 271878 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||| || || ||||||||||| || |||||||| ||| Sbjct 271635 AAGATCCAGGACAAGGAAGGCATTCCACCTGATCAGCAGCGTCTGATCTTTGCTGGCAAG 271694 Query 27550 CAACTCGAGGATGATCGTAC 27569 || |||||||| | ||| || Sbjct 271695 CAGCTCGAGGACGGTCGCAC 271714 >seq1445 Length=178852 Score = 120 bits (132), Expect = 3e-22 Identities = 265/384 (69%), Gaps = 15/384 (4%) Strand=Plus/Plus Query 31165 AAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCC 31224 ||||| || || || |||| || ||||| || | || ||| | || || || |||||| Sbjct 43535 AAGAAGACTGACGGTGCCAAGAAATCTCGTCTTTCCGGTATTTCCAAACTTGATGACGCC 43594 Query 31225 AACTGGGCCGGTACCCA-CAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTC 31283 ||| |||||||| | || | ||| | |||| ||||| || | || || || || || Sbjct 43595 AACAATGCCGGTACTCGTCATGCCGC-CAAGTGTACGCTCATCTTGACGGAAGGAGATTC 43653 Query 31284 GGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTT 31343 || ||||| | || || |||| || |||||||| || || | | | |||||||| Sbjct 43654 AGCCAAGGCTTTGGCCGTTTCTGGTTTAAGTGTTGTTGGCCGTGA--CAATTGGGGTGTT 43711 Query 31344 T--CCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGAT 31401 | ||||| || || ||| | || |||||||| ||||| ||| || | | ||| Sbjct 43712 TTTCCGCTTCGTGGTAAGTTACTCAATGTTCGTGAAGCCTCGCATAAGCAAATCATGGAA 43771 Query 31402 AATGAAGAGTTT--TCCAACCTGAAAAAGATCCTCGGGCTT-CAGCATGGCAAGGTATAT 31458 |||| || || || || | || | || | |||||| |||||||||||| || Sbjct 43772 AATGCCGAAATTAATCAAATC--AAGCAAATTAT-GGGCTTACAGCATGGCAAGCAGTAC 43828 Query 31459 AATTC-ACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATCTCGA 31517 | ||| || || || || || |||||||| |||||||| |||||||| || | || Sbjct 43829 ACTTCAACGGAAAG-CTTACGTTACGGTCGTCTCATGATCATGACCGATCAGGACCATGA 43887 Query 31518 CGGCAGTCACATCAAGGGTCTTGT 31541 |||| |||||||| || ||||| Sbjct 43888 CGGCTCGCACATCAAAGG-CTTGT 43910 >seq368 Length=262043 Score = 107 bits (118), Expect = 2e-18 Identities = 375/580 (65%), Gaps = 14/580 (2%) Strand=Plus/Minus Query 64295 CTTTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCT 64354 |||||||| | ||| | | || ||||| || | ||||||||||| || ||||| Sbjct 28862 CTTTCCCATTCAGGAGCAC-GAAGTGTGGCAGATGTACAAGAAAGCTGAAGCTTCTTTCT 28804 Query 64355 GGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCAC 64414 |||| | ||||| | ||||| | | ||||| | || |||| ||| ||||| Sbjct 28803 GGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGG-----CTAGCCTCAC 28749 Query 64415 AGG-AAC-AGC---ACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAAT 64469 | ||| ||| | ||||| ||| || || || ||||| || | |||||||| || Sbjct 28748 GGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAGTGACGGCAT 28689 Query 64470 TGTGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTC 64529 ||| ||| ||| | | | | ||||||| || || || ||| | |||||||| || | Sbjct 28688 CGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAGTGCAGGTGCCAGAGGCTCGCTG 28629 Query 64530 ATTCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGAT 64589 || || | || ||| | ||| | ||| || || ||| ||||| |||| Sbjct 28628 CTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACTCGCTTTTGAT 28569 Query 64590 TGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGT 64649 ||||| || | | || | | |||||||| || | | ||||| |||||| | Sbjct 28568 TGACACGTATATCAAAGACGCGATTGAGAAGGACCATCTACTACGTGCTATCGAGACTAT 28509 Query 64650 ACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGG---TCGTC 64706 || || || ||||| || | ||||| | |||| ||| || || || Sbjct 28508 CCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGGGTCTCTTC 28449 Query 64707 GTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATT 64766 | | | || || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 28448 CTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATT 28389 Query 64767 CTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGA 64826 ||| || || || ||||| || ||||| || | ||||| ||||| ||||| ||||| Sbjct 28388 CTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGA 28329 Query 64827 GCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCG 64866 ||| || ||||||||||| | ||| || |||||| Sbjct 28328 GCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCG 28289 >seq1525 Length=339361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || || || || ||| | |||||||||||||||||||| || || | ||| Sbjct 204934 GGAATTCCCCCGGATCAACAACGTTTGATTTTTGCTGGTAAGCAACTTGAAGACGGACGT 204875 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| | ||||| || ||||||||||||| |||||||| Sbjct 204874 ACCCTTTCCGACTACAACATCCAAAAGGAATCAACTCTTCA 204834 >seq312 Length=309945 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 80040 CCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACT 80099 ||||| |||||||||||||||||||| || || ||||| |||| | |||||| || | Sbjct 16780 CCGCATGTAGTACATGCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATGGACGT 16839 Query 80100 GAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAA 80159 ||| || || || |||| | | ||| ||||||| || ||| |||||| || || Sbjct 16840 GAGTTTGCTAATCGTCGGGTCCGCAATGTGAATGTTCAACGATTGACTCTGACAAATAAA 16899 Query 80160 AGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || |||||||| || | || || | | | |||||| || ||||| ||||| Sbjct 16900 CGCGCCACGATCCGCGGACAGATCGAGCACGGCCTTTTGCTTGATCTCCCACACTGT 16956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294965974800