Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1110 114 8e-21 seq1422 91.5 9e-14 seq1525 89.7 3e-13 >seq1110 Length=486086 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||||||||| || || | ||||| || | ||||||||||| || || ||||| | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | |||||||| ||||| ||||| | || |||||||| ||| || || |||| Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 256173 Query 34637 AAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| ||||| || | ||||| |||| || || || || || || ||||| || ||| Sbjct 256172 CAATGCTGTCTGACGGT-TCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 34696 AAAATCTGCATG 34707 |||||||||||| Sbjct 256113 AAAATCTGCATG 256102 >seq1422 Length=277306 Score = 91.5 bits (100), Expect = 9e-14 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| | ||||| ||||| || | |||||| || || || || || | | || || | Sbjct 271310 ACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACC 271251 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||| || || || || ||||||||||| | |||||| || || || || | ||| ||||| Sbjct 271250 GTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTT 271191 Query 34611 GTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||||||||| ||| ||| || || | ||| ||||| |||| || | Sbjct 271190 GTCCTGGATCTTTTGCTTT-ACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGA 271132 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || | || || || ||||| ||||| Sbjct 271131 TCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 >seq1525 Length=339361 Score = 89.7 bits (98), Expect = 3e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| |||||||| ||||| || || ||||| || || |||||||| Sbjct 204828 ACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 204887 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCC 34604 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 204888 AGTTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGGGGAATTCC 204934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721295564445