Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1355 147 2e-30 seq1110 131 1e-25 >seq1355 Length=184863 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| || ||| | || |||||||| || || || || Sbjct 90883 CATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTC 90824 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||| || | || || || || ||||| ||||| ||||| || ||||| || || Sbjct 90823 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90764 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| |||| | || ||||| || ||||| ||| | || | ||| ||||| Sbjct 90763 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 90704 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || |||||| |||| || ||||| Sbjct 90703 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGCAT 90653 Score = 145 bits (160), Expect = 7e-30 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| || ||| | || |||||||| || || || || Sbjct 91112 CATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTC 91053 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||| || | || || || || ||||| ||||| ||||| || ||||| || || Sbjct 91052 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 90993 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| |||| | || ||||| || ||||| ||| | || | ||| ||||| Sbjct 90992 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAA 90933 Query 27167 CATTCA-AAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||||| | || | || |||||| |||| || ||||| Sbjct 90932 CATCCAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGCAT 90881 Score = 143 bits (158), Expect = 2e-29 Identities = 171/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || ||||| || ||| | || ||||| || || || || || Sbjct 91340 ATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCCATCT 91281 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| ||||| || ||||| || || Sbjct 91280 GACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 91221 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 || ||| |||| | || ||||| || ||||| ||| | | | || ||| ||||| Sbjct 91220 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACTACAA 91161 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || |||||| |||| || ||||| Sbjct 91160 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCGTGGAGGCAT 91110 Score = 125 bits (138), Expect = 6e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| || ||| ||||||||||||| || | | | || Sbjct 90655 CATGCAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTG-AGCTTC 90597 Query 27047 CGACTCGATTGAGATGGTCAA--ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||||||| || | || || | || ||||| | ||||| ||||| || ||||| || Sbjct 90596 CGACTCGATCGACA-AGTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGAC 90538 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||| |||| | || ||||| || ||||| ||| | || | ||| ||| Sbjct 90537 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTAC 90478 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || |||||||| | || | || ||||| |||| ||||| Sbjct 90477 AACATCCAGAAAGAGTCGACTCTTCACCTTGTGTTGCGCCTGCGTGGTGG 90428 >seq1110 Length=486086 Score = 131 bits (144), Expect = 1e-25 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| |||||| | ||||| || || ||||||||||| Sbjct 256102 CATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTC 256161 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||| | || || || ||||| || ||||| |||||||| || || || || Sbjct 256162 AGACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCA 256221 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTA 27163 |||||||| || | || ||||| ||| | ||||| | |||| || || | || || Sbjct 256222 GCAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTC-AC--TTGCGGACTA 256278 Query 27164 CAACATTCAAAAGG 27177 |||||||||||||| Sbjct 256279 CAACATTCAAAAGG 256292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906630020800