Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq100 545 3e-150 >seq100 Length=112360 Score = 545 bits (604), Expect = 3e-150 Identities = 695/957 (73%), Gaps = 0/957 (0%) Strand=Plus/Plus Query 176140 AACAGAATTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCA 176199 |||||| | ||| |||| ||||| || || | |||||||| || | || ||| | Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACT 40238 Query 176200 GCATGTTTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAA 176259 ||||||| || | | ||||| ||||| || || || || || || || |||||||| Sbjct 40239 ACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAG 40298 Query 176260 CCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGC 176319 |||||||| ||||| ||| | |||||||||||||| || ||||| || | | || || Sbjct 40299 CCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGT 40358 Query 176320 TCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGG 176379 ||||||||||| || | || || || || || |||||||| || | |||| |||||| Sbjct 40359 TCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGG 40418 Query 176380 CTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT 176439 | || || || || ||||| ||||| | ||||| |||||| | | ||| | | | Sbjct 40419 TTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGT 40478 Query 176440 TACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTT 176499 || | || || | |||||| | || | | |||| ||||| |||||||| | |||| Sbjct 40479 TATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTT 40538 Query 176500 GCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAA 176559 || | || || |||||| ||||||| | || || ||| | | ||||| | || ||| Sbjct 40539 GCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAA 40598 Query 176560 GGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTA 176619 ||| ||| ||||||||||||||| | || |||||||| || || ||||| ||||| || Sbjct 40599 GGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTT 40658 Query 176620 TTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTG 176679 |||||||| ||||| ||||| ||||||| ||||| || ||| ||| ||||| || || Sbjct 40659 TTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTT 40718 Query 176680 TTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGA 176739 ||||| || || | || || |||||||||||| | | || ||||| ||| || || | Sbjct 40719 TTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGT 40778 Query 176740 GAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACA 176799 || || | |||| |||||||| ||| || || |||||||| |||||||||||||| ||| Sbjct 40779 GAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACA 40838 Query 176800 TACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 176859 || || ||||| ||||| ||||| || || || | | || || || || || ||| Sbjct 40839 TATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTT 40898 Query 176860 AATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTT 176919 ||||||||| | | ||||||||| | || |||| ||||| ||| | || ||||| Sbjct 40899 AATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTA 40958 Query 176920 ACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 176979 |||||| | || || | |||||||| || ||| | ||||| || ||||| || || || Sbjct 40959 ACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCG 41018 Query 176980 GTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAAC 177039 | | || | | || | ||| ||| || |||| |||||| | ||| | ||||| Sbjct 41019 ATTATTGATAGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAAT 41078 Query 177040 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 ||||| || ||||| ||||| || ||||||||||| ||||||||| | || |||||| Sbjct 41079 CTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603478067932800