Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq1839 134 5e-27 >seq1839 Length=75268 Score = 134 bits (148), Expect = 5e-27 Identities = 302/442 (68%), Gaps = 14/442 (3%) Strand=Plus/Plus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879 ||||| | | | || || ||| || || || || || ||||||||||| || | || Sbjct 45609 ACGACATCAGCTTCGGCATCGGTCCGGCCGGCACCGGCAAGACCTTCCTCGCGGTGGCCT 45668 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| ||| ||| ||| | | | | || ||| || || | |||||||| || Sbjct 45669 GCGCGGTGGACGC--GCTCGAGCGCTCGACGGTGCAACGCATCATCCTGACCCGGCCGGC 45726 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCAC 5998 || || || | ||| ||||| ||||||||||| | || ||| ||||| ||| | Sbjct 45727 GGTGGAAGCCGGCGAGCGCCTCGGATTCCTGCCCGGTGATCTG-ACGCAGAAGGTGGATC 45785 Query 5999 CCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGA 6055 |||| || ||| || |||||| || |||||| | || |||| |||| | Sbjct 45786 CCTATCTGCGGCCGCTGTACGACGCGCTGTATGACCTGATGGGTTTCGACCGCGTGACCA 45845 Query 6056 AGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGA 6115 || |||| ||||| | | ||||||||| |||| ||||| |||| |||||| ||||||| Sbjct 45846 AG-GCCT--TCGAGAAGGGGCAGCTGGAGATCGCGCCGCTCGCCTTCATGCGGGGCCGGA 45902 Query 6116 CGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCAGACC 6174 || | ||| || ||| | | || |||||| ||||||| | || |||| || ||| Sbjct 45903 CGCTGAACCACGCGTTCGTGATCCTGGACGAGGCGCAGAACACGACGCCCGAGC-AGATG 45961 Query 6175 GCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCC 6234 | || | | |||||| | |||||||| | ||| ||| ||| ||| ||| || | Sbjct 45962 AAGATGTTCCTCACCCGCATCGGCTTCGGCAGCAAGTGCGTGGTGACCGGCGACACGAGC 46021 Query 6235 CAGTGCGACCTGCCGCCCGGCA 6256 ||| ||||||||||| ||||| Sbjct 46022 CAGATCGACCTGCCGCGCGGCA 46043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191483076963200