Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq1390 199 1e-46 >seq1390 Length=268060 Score = 199 bits (220), Expect = 1e-46 Identities = 250/339 (74%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 40090 GCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCC--CCGTACTTCTCGGTGACGTACCGG 40147 |||||||||| ||||||| ||| | ||||| |||||||| || | |||||| | Sbjct 43665 GCCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGTACTCG 43722 Query 40148 ATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGC 40205 |||||| | |||| || | || |||||||||||| | ||| ||||| ||||| | Sbjct 43723 ATGACCCGGTCGCGGTTGCCCTGGCA--GAAGTCGATGTCGAAGTCAGGCATCGACACCC 43780 Query 40206 GCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGA 40265 |||| ||||||||||| |||||||| | || || || ||| || || |||||||||| Sbjct 43781 GCTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGA 43840 Query 40266 TCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACA 40325 || || ||| ||||||||||| || || |||| || || || || || ||| Sbjct 43841 TCAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCACCGGGC 43900 Query 40326 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGC 40385 |||||| | ||||||||||| ||||||||| | |||| ||||||||| ||||||| Sbjct 43901 AGCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGGGGAAGC 43960 Query 40386 CCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40424 |||||| |||||| | ||| |||| ||| ||| ||| Sbjct 43961 CCATCTTGATGATGGTCGCGAGCTCGAACTCCAGCCGCT 43999 Score = 105 bits (116), Expect = 2e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 39033 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCG 39092 |||| |||| | | ||| |||||| | ||||| | ||||| | ||| |||||| | Sbjct 42602 ACTCCGCCGTGAAATGCACCTTCAGCCAGCCCGTGTGATAGGCCAGCAGCGAGTACGCGG 42661 Query 39093 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCT 39152 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | | Sbjct 42662 CCGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTCGT 42721 Query 39153 GGA--TGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAA--GTTCACGAAC 39208 | | | ||| ||| ||| |||| ||| ||||| |||| | || || Sbjct 42722 CGGCCTTGTTCTGGTCGAT--GCCCTTCTCGGCCGCGCCCTTGCGGAACAGGTCGCGG-- 42777 Query 39209 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGG 39268 | | |||||| | |||| ||||||||||||||| || |||||||||| ||| || | Sbjct 42778 TGCATGGCCATCTCTTCGGCCTTCTTCTTGCCCATCGCGCGACGCAGCATGTCCGCGCCG 42837 Query 39269 CCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATG 39328 || || || || | || | |||||| | || | |||||| |||||||||| ||| Sbjct 42838 CCGAGCGAATACCCGCCCAGCACCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCATG 42897 Query 39329 AGCCCGTACGTC 39340 | |||||| ||| Sbjct 42898 ATCCCGTAGGTC 42909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160402276051710