Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq154 116 3e-21 >seq154 Length=42511 Score = 116 bits (128), Expect = 3e-21 Identities = 150/203 (74%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 96661 GAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGG 96720 ||| ||||| | | ||| | ||||| ||||| ||||| |||| || ||||| || || Sbjct 16985 GAAGGAGAGTCGCGTCGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGG 16926 Query 96721 CCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGAC 96780 |||||||| ||||||| || || || || || || || ||||||||||| | ||| | Sbjct 16925 ACGCTGCGTGGCCAGGATCAGGTGGATGCCCGCGGCACGGGCCTTCTGGGCCAGGCGCGC 16866 Query 96781 AAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCG 96838 || ||| |||||| || |||||| || ||||||||||||| || | |||||| Sbjct 16865 GATCAGTT--CCTCGA--TC-TTCTTGCCCACGACCATCATGAGGTCGGCCAACTCGTCG 16811 Query 96839 ACCACTACCACGATGTAGGGGAG 96861 | ||| || ||||||| ||| || Sbjct 16810 ATCACCACGACGATGTGGGGCAG 16788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351225932329965