Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq1390 163 9e-36 >seq1390 Length=268060 Score = 163 bits (180), Expect = 9e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | ||| ||||| || || ||||| ||||||||||| |||||||| | Sbjct 43749 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCCGGGTTCAGGAAACGCTCGAACAG 43808 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || | | |||||||||||||||||| || |||||||| |||||||||| Sbjct 43809 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCAGCAGCACGTACGCGACCAGCGAGCC 43868 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || || || || ||||| ||| |||||| | ||| ||||||| |||||| Sbjct 43869 CGCGCCCGATCCCCGGCCCGGGCCCACCGGGCAGCCGTTGTTCTTGGCCCAGCGGATGAA 43928 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| | |||| ||||||||| ||||| ||||||| | |||| | ||| |||| | Sbjct 43929 GTCACCCACGATGAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTCGCGAGCTCGAA 43988 Query 39321 CTC 39323 ||| Sbjct 43989 CTC 43991 Score = 109 bits (120), Expect = 2e-19 Identities = 214/313 (68%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 37940 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCG 37999 |||| |||| | | ||| |||||| | ||||| | ||||| | || |||||| | Sbjct 42602 ACTCCGCCGTGAAATGCACCTTCAGCCAGCCCGTGTGATAGGCCAGCAGCGAGTACGCGG 42661 Query 38000 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCC 38059 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | Sbjct 42662 CCGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTC-- 42719 Query 38060 GGATGGCAGCCTCCGAGTAG---CCTCGCTCGCTCGCCCCCTTCTGGAA--GTTCACGAA 38114 | ||| | | || | || |||| ||| ||||| |||| | || || Sbjct 42720 -GTCGGCCTTGTTCTGGTCGATGCCCTTCTCGGCCGCGCCCTTGCGGAACAGGTCGCGG- 42777 Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 | | |||||| | | |||| ||||||||||||||| |||||||| || | ||| || Sbjct 42778 -TGCATGGCCATCTCTTCGGCCTTCTTCTTGCCCATCGCGCGACGCAGCATGTCCGCGCC 42836 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||||| | |||||| |||| | |||||| | || | |||||| |||||||||| || Sbjct 42837 GCCGAGCGAATACCCGCCCAGCACCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCAT 42896 Query 38235 GAGCCCGAAGGTC 38247 || |||| ||||| Sbjct 42897 GATCCCGTAGGTC 42909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159711093822030