Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq1390 161 3e-35 >seq1390 Length=268060 Score = 161 bits (178), Expect = 3e-35 Identities = 238/332 (72%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 39425 ATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCG--CTGCCGTACTTCTCGGTGACGT 39482 ||| ||||| | ||||||||||| ||| | || | ||||||||| || | |||| Sbjct 43660 ATCGTGCCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGT 43717 Query 39483 ACCGGATCAC---GTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGG 39539 || ||| || ||||| || || || |||||||||||| | ||| ||||| | Sbjct 43718 ACTCGATGACCCGGTCGCGGTTGCCCTGG-CA--GAAGTCGATGTCGAAGTCAGGCATCG 43774 Query 39540 AGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39599 | || ||||| ||||||||||| |||||||| | || || | | |||||||||| Sbjct 43775 ACACCCGCTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGT 43834 Query 39600 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGA 39659 |||||||| || |||||||| |||||||||| || | || || || || ||||| | Sbjct 43835 CGGTGATCAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCA 43894 Query 39660 CCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39719 || ||||| | ||| ||||||| ||||||||| | |||| ||||||||| | Sbjct 43895 CCGGGCAGCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGG 43954 Query 39720 GGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 |||| ||||||| | |||| | ||| |||| Sbjct 43955 GGAAGCCCATCTTGATGATGGTCGCGAGCTCG 43986 Score = 109 bits (120), Expect = 2e-19 Identities = 214/313 (68%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 38373 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCG 38432 |||| |||| | | ||| |||||| | ||||| | ||||| | || |||||| | Sbjct 42602 ACTCCGCCGTGAAATGCACCTTCAGCCAGCCCGTGTGATAGGCCAGCAGCGAGTACGCGG 42661 Query 38433 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCC 38492 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | Sbjct 42662 CCGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTC-- 42719 Query 38493 GGATGGCAGCGTCCGAGTAG---CCTCGCTCGCTTGCTCCCTTCTGGAA--GTTCACGAA 38547 | ||| || | || | || |||| || ||||| |||| | || || Sbjct 42720 -GTCGGCCTTGTTCTGGTCGATGCCCTTCTCGGCCGCGCCCTTGCGGAACAGGTCGCGG- 42777 Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 | | |||||| | | |||| ||||||||||||||| |||||||| || | ||| || Sbjct 42778 -TGCATGGCCATCTCTTCGGCCTTCTTCTTGCCCATCGCGCGACGCAGCATGTCCGCGCC 42836 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||| | |||||| |||| | |||||| | || | |||||| |||||||||| || Sbjct 42837 GCCGAGCGAATACCCGCCCAGCACCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCAT 42896 Query 38668 GAGCCCGAAGGTC 38680 || |||| ||||| Sbjct 42897 GATCCCGTAGGTC 42909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160235880329750