Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1355 86.0 4e-12 >seq1355 Length=184863 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 ||||| |||||||| || ||| | || || || |||||| |||| || || || | Sbjct 90654 ATGCAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGA--GCTTC 90597 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAA--AATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| ||| |||| || || || || ||| ||||| ||||| |||| | Sbjct 90596 CGACTCGATCGACAA---GTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTG 90540 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| |||||||||| || || || ||||| |||| || | || ||| | Sbjct 90539 ACCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACT 90480 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| |||||| ||| | || | || ||||| ||||||| || Sbjct 90479 ACAACATCCAGAAAGAGTCGACTCTTCACCTTGTGTTGCGCCTGCGTGGTGG 90428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853010236955