Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1355 196 1e-44 seq1422 145 2e-29 seq1775 143 6e-29 seq1110 136 9e-27 seq1525 84.2 5e-11 >seq1355 Length=184863 Score = 196 bits (216), Expect = 1e-44 Identities = 173/215 (80%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 ||||||||||| || ||||| || |||||||| || || | ||| | | | || || || Sbjct 91131 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCTC 91190 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||||||| || || || || ||||| |||||||| |||| ||||||||||||||| Sbjct 91191 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 91250 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||| ||||| | |||||| || || ||||||||||| ||||| Sbjct 91251 AATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTT 91310 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 |||||| || ||||||||||| | ||||||| ||| Sbjct 91311 TCCCGTCAGCGTCTTTACAAAAATCTGCATTGTAT 91345 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||| || ||||| || |||||||| || || || || | || || ||| Sbjct 90674 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90733 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||||||| || || || || ||||| |||||||| |||| ||||||||||||||| Sbjct 90734 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 90793 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || |||||||| ||||| | ||| || ||||| || |||||||| |||||| Sbjct 90794 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTT 90853 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | |||||| || || | |||||| Sbjct 90854 CCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 172 bits (190), Expect = 1e-37 Identities = 167/211 (79%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTT-TGGATGTTATAATC-CGCAAGGGTCCTTCCATCTT 210963 ||||||||||| || ||||| ||| |||||||| || || | ||| | | | || || | Sbjct 90902 ACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAG-TACGGCCGTCCT 90960 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||| ||||||||| || || || || ||||| |||||||| |||| |||||||||||||| Sbjct 90961 CCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCT 91020 Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 | ||||| || |||||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 91021 GAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCT 91080 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| | |||||| || || | |||||| Sbjct 91081 TTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 163 bits (180), Expect = 7e-35 Identities = 166/212 (78%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| |||||||| |||||||| || || || || | || || ||| Sbjct 90446 ACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90505 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||||||| || || || || ||||| |||||||| |||| |||||||||||||| Sbjct 90506 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAA 90565 Query 211026 A--TCTTTTGTTTCACGTTTTCGATGGTGTCAG-AGCTTTCAACCTCGAGAGTGATCGTC 211082 | |||| || ||||| || ||||| | ||| | ||| ||||| || ||||| || ||| Sbjct 90566 ATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAGC--TCAACGTCAAGAGTAATAGTC 90622 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| | |||||| ||||| | |||||| Sbjct 90623 TTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 >seq1422 Length=277306 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||| || || || || || || || | || | || || Sbjct 271306 AGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCC 271247 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || || || || || ||||| |||| ||||||||||||| Sbjct 271246 TCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCC 271187 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || ||| || || | |||||||||| Sbjct 271186 TGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTC 271127 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || |||||||| || || | |||||| Sbjct 271126 TTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || || || || || || | || | || || Sbjct 271534 AGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCC 271475 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || || ||||| |||| |||||||||||| Sbjct 271474 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCC 271415 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || ||||| | || ||| || || || || || |||||| Sbjct 271414 TGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTC 271355 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||||||||| | ||||| Sbjct 271354 TTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || ||||||||||| || ||||| || || || || ||||| |||| |||||| Sbjct 271708 CCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCC 271649 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||||||||||||||||| || || || ||||| Sbjct 271648 TTGTCCTGGATCTTTTGCTTTACATTGTCGAT 271617 >seq1775 Length=332822 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || || || ||||| || || || || || || | |||| |||||||| Sbjct 274980 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCG 274921 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| || || || ||||| || |||| |||||||||||||| Sbjct 274920 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 274861 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||| || || || ||| | || ||| || || || || || || ||||| Sbjct 274860 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 274801 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| || || | ||||||||| Sbjct 274800 CCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1110 Length=486086 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || |||||||| | | |||||||| || |||||||| || ||||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| || || || || || ||||| ||||| | ||||| ||||| Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 256110 ATCTGCAT 256103 >seq1525 Length=339361 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||||||||| || || | |||||| | ||| ||| Sbjct 204825 AGAACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCGTCT 204884 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||| || || || || | |||||||| || || |||| |||| Sbjct 204885 TCAAGTTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGGGGAATTCCT 204935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159119846210225