Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1775 104 2e-17 seq1422 100 2e-16 seq1110 95.1 1e-14 >seq1775 Length=332822 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | || ||||| ||||| || ||||| || || || | || || | Sbjct 274986 CGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCA 274927 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || |||||||||||||||| || | | || ||| Sbjct 274926 TCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTG 274867 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||||||||||||| | | | || | |||| | ||||||||||| ||| || Sbjct 274866 TCCTGAATTTTCTGTTTGA-CATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAAT 274808 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || |||||||| || || || || || ||||| || Sbjct 274807 GGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1422 Length=277306 Score = 100 bits (110), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | || || | ||||| || ||||| | ||| || | Sbjct 271336 ACAAAAATTTG--CATGCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCT 271279 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 ||||||| || || || | || || |||| || ||||| ||||| |||||||| |||| Sbjct 271278 GTATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGAC 271219 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||| || | || | | || |||||| ||| || || || | | | | || Sbjct 271218 GCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCG 271159 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 || | |||||||||| ||||| | || || ||||| || || || || |||| Sbjct 271158 AGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTT 271099 Query 39281 GCAT 39284 |||| Sbjct 271098 GCAT 271095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | || || | |||| || ||||| ||| || | Sbjct 271564 ACAAAAATTTG--CATGCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCT 271507 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || || | || || |||| || ||||| ||||| ||||| || |||| Sbjct 271506 GAATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGAC 271447 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||| || | || | || || |||||| ||| || || || | | | | || Sbjct 271446 GCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCG 271387 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 ||| | ||||||||||| ||| || | || || |||| || || ||||| |||| Sbjct 271386 AATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTT 271327 Query 39281 GCAT 39284 |||| Sbjct 271326 GCAT 271323 >seq1110 Length=486086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || || ||||||| || | || ||||| || ||||| ||||| || Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 | |||||||||||| | || | || || |||||| ||||||||| || | | | | | Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTGTC 256172 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | || || |||||||||| ||| || | || ||||||| ||| || ||||| Sbjct 256171 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAA 256112 Query 39276 GATTTGCAT 39284 || ||||| Sbjct 256111 AATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534266036645