Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1775 113 3e-20 seq1422 111 1e-19 seq1355 105 5e-18 seq1110 89.7 3e-13 >seq1775 Length=332822 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| ||||| || || || || || || || || || Sbjct 274769 AAAATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCC 274828 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | |||| | | ||||| |||||| ||||| ||||| | || || || Sbjct 274829 TCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 274888 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||| ||||| || || ||||| | || ||||| | || ||| Sbjct 274889 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTAC 274948 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || ||||| || || Sbjct 274949 AATATTCAGAAAGAATCGAC 274968 >seq1422 Length=277306 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || || || || || ||||||||| | || || || | | Sbjct 271094 AATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTC 271153 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | || | |||| ||||| || ||||| ||||| | || || ||||| Sbjct 271154 GGACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCA 271213 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | |||||||||||||| || || || |||| || ||||| | || ||||| Sbjct 271214 GCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAA 271273 Query 23790 CATACAAAAAGAGT 23803 ||||| || |||| Sbjct 271274 TATACAGAAGGAGT 271287 >seq1355 Length=184863 Score = 105 bits (116), Expect = 5e-18 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || |||||||| || ||||| | | Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || || ||| ||||| ||||| | || || || || Sbjct 91051 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90992 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || |||| |||| || ||||| |||| |||||| Sbjct 90991 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAAC 90932 Query 23791 ATACA-AAAAGAGTCCAC 23807 || || ||| ||||| || Sbjct 90931 ATCCAGAAAGGAGTCGAC 90914 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || |||||||| || ||||| | | Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || || ||| ||||| ||||| | || || || || Sbjct 90822 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90763 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || |||| |||| || ||| | |||| |||||| Sbjct 90762 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAAC 90703 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 90702 ATCCAGAAGGAGTCGAC 90686 Score = 104 bits (114), Expect = 2e-17 Identities = 145/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || |||||||||||| || || || || |||||||| || ||||||||||| || || | Sbjct 91344 TACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCC 91285 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| | | || | | || || || ||| ||||| ||||| | || || || Sbjct 91284 ATCTGACTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGA 91225 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG-CACTTTAGGCGATT 23785 || || ||| |||| ||||| ||||| || |||| |||| || ||||| |||| | Sbjct 91224 CCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACT 91165 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || || ||||| || Sbjct 91164 ACAACATCCAGAAGGAGTCGAC 91143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | |||||||| || || ||||| || ||||| | | Sbjct 90654 ATGCAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGA-GCTTCC 90596 Query 23671 GACACTGTTGAAATATTAA-AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || | | || | || ||||| ||||| ||||| | || || || || Sbjct 90595 GACTCGATCGACAAGTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACCA 90536 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| |||| ||||| ||||| || |||| |||| || ||| | |||| ||||| Sbjct 90535 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 90476 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 90475 CATCCAGAAAGAGTCGAC 90458 >seq1110 Length=486086 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || || || || || || || | | Sbjct 256103 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 256162 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | |||| || ||||| ||||| ||||| | ||||| || || Sbjct 256163 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 256222 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||||| || ||||| ||||| ||||| ||||| | || ||||| | || |||| Sbjct 256223 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTT--GCGGACTACA 256280 Query 23789 ACATACAAAA 23798 |||| ||||| Sbjct 256281 ACATTCAAAA 256290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000681299820