Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1526 315 6e-81 seq368 158 1e-33 seq811 111 1e-19 >seq1526 Length=132622 Score = 315 bits (348), Expect = 6e-81 Identities = 617/903 (68%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||||||| || || |||||| ||||| ||||| || |||| || Sbjct 118386 ACACCAGCCTTTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAG 118445 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| ||||| ||||| || ||||| | | |||||| ||| |||| || Sbjct 118446 GAAATCAAGTCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGG 118505 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 || || | ||| || ||||| |||||||| || ||||||| |||||| |||| || || Sbjct 118506 GCAACCAACAAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATG 118565 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 ||||| || || || | || | |||| || || ||||| || | || ||||| Sbjct 118566 CCAATCAAAGCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCC 118625 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTT--ACT-AAGTATCCAAACAAT 4544 || || || | |||| | | | ||| || | | || |||| | || || Sbjct 118626 GTAATGATGTGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAAC 118685 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| |||||||||||||| | ||||||||| | ||| || ||||| || || || || Sbjct 118686 AAACAGGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTC 118745 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || |||||||| || || | ||| || | ||| || || || |||||||| || |||||| Sbjct 118746 AAACCGGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAG 118805 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||| ||||| ||||| || || | || || || |||| | || | | Sbjct 118806 AAGATACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTT 118865 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||| | ||||||| | || || ||| || || || |||| || || Sbjct 118866 TCAATCCAACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCA 118925 Query 4785 TT---AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || ||||||| |||| |||||| |||| || || || || || || Sbjct 118926 TTGAAAAGGAATTTAC---GCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAG 118982 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||||| || || ||||| || || || || ||||||||||| | ||||||| Sbjct 118983 TACATTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCT 119042 Query 4902 GTTACTTGAACTTCGT-TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | ||||||||||| | | | ||| | || |||||||| || || ||||| ||| Sbjct 119043 GGAACTTGAACTTCTTGTGCGAAA-CGAGTAACCAAGTTTTCATTGACAATACCATCAGA 119101 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGT---TCGTCAGGCTTAAGTTT 5017 ||| ||||| || ||||||||| |||| | |||| | || |||| || | || ||| Sbjct 119102 GGCAGCAAAGAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAG--TCAACTTT 119159 Query 5018 T--TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 | | ||| || | || || | | ||||||||||| ||||||| || || ||| Sbjct 119160 TCGTCCCAATGTTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCT 119219 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTG 5135 || || || ||||| | ||||||||| |||||| || |||| | ||| || | | Sbjct 119220 TCAGCCTTCTTGTAGAATTGCCAAATATCGTGATACTTGATGGGAAAGAGGACGAAACGG 119279 Query 5136 TTG 5138 ||| Sbjct 119280 TTG 119282 >seq368 Length=262043 Score = 158 bits (174), Expect = 1e-33 Identities = 389/586 (66%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | |||||||| || |||| ||| ||||| | |||||| || ||||| |||| Sbjct 28279 ACAAAAGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAA 28338 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | ||| || ||||||||||| | ||| || |||||||| || | | ||||| |||| Sbjct 28339 AGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAG 28398 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTA----CTAATCGGGACCCGAACGAGCTG 4715 | || || |||||||| || || ||||| || | | || ||| ||| ||| Sbjct 28399 AGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAA-GAG--A 28455 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | || | | ||| || | ||||||| |||||||| | ||||| || || || Sbjct 28456 CCCGTGGATCGCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTC 28514 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | ||||| | || | || |||| | ||||| ||||| ||||| || | Sbjct 28515 TCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTGATATACGTGTCAATCAAA 28574 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || |||| ||| || |||||||| || || || || ||||| ||||||||||| | | Sbjct 28575 AGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGA 28634 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 || |||| || || |||||||| | ||| | ||| ||||| || || || ||| Sbjct 28635 GCCTCTGGCACCTGCACTTCGTTGCTAAAATTCATGGCTAGATTTTCATTCACGATGCCG 28694 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| || ||||| || || | ||||| || || || | |||| | | || Sbjct 28695 TCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGG 28754 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 | ||| | || ||| | | ||| | ||| ||| | ||||| || || ||| Sbjct 28755 CTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCT 28814 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 || ||||| |||||||| ||| | || | | |||||| |||| Sbjct 28815 TCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAA 28860 >seq811 Length=1194 Score = 111 bits (122), Expect = 1e-19 Identities = 234/340 (69%), Gaps = 13/340 (4%) Strand=Plus/Plus Query 4778 TATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAG 4837 || ||| ||||| |||| |||| ||| | |||| || ||||| || |||| || Sbjct 44 TAAAGCATTAAACAATTCTGTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTAATAA 103 Query 4838 GCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGC 4897 |||| |||| || || ||||| || |||||| || || || || | | || Sbjct 104 AGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAACTTCGC 163 Query 4898 TTCTGTTACTTGAACTTCG-TTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 ||| | |||||||||| ||||||| | | || | |||||||| ||||| || |||| Sbjct 164 TTCAGCATATTGAACTTCGTTTACAAAGT-TCTCAGCCAAGTTTTCATTTACGATTCCGT 222 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA-CTGT--TCGTCAGGCTTAA 5013 || |||||||| || || |||| ||| || || || || | |||||| || | Sbjct 223 CAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCA---TTCA 279 Query 5014 GT---TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAAC 5069 || || ||||| | | |||||||| ||||| | ||||||| ||||||| |||| Sbjct 280 GTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAAC 339 Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 | |||||| |||||| ||| |||||||||| ||| Sbjct 340 TA-GCTTCCATTTTTTTATACCATTCCCAAATATCATGAT 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038331895945