Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq1501 91.5 2e-13 >seq1501 Length=377221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 99188 GGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATG 99247 |||||| | ||| |||||| |||||||| || || | | | ||||| || |||||| Sbjct 69636 GGCGTGGCCAAGGGAGACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATG 69695 Query 99248 CGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTC 99306 || ||| ||||| | || || || ||||| || ||||| ||| | || || || || Sbjct 69696 CGATTCGATCTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAGGTG-CATCTGAAGTC 69754 Query 99307 GATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGA 99366 ||| || | || ||||||||||||||| || || | || ||||| | || | || Sbjct 69755 GATCATCCTGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGA 69814 Query 99367 TAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATA 99426 || || || |||||||| ||| | | | || || ||||| || ||||| || Sbjct 69815 ACGCGGCTGCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCGGTGTA 69874 Query 99427 CGGTAAACAGTGGCGGTCTTGGCC 99450 ||| || |||||| ||||| Sbjct 69875 CGGCGTGCAATGGCGGAGCTGGCC 69898 Score = 87.8 bits (96), Expect = 3e-12 Identities = 166/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCT--GC 99260 ||||| || || || ||||| | | ||||||| ||||| ||||| |||||||| || Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCTCAGC 70348 Query 99261 AAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAA 99319 ||| ||||| || || | || || ||| ||| |||| |||| || || ||| || Sbjct 70349 AAG--GGCTTCCCCGTGCTGACCACAAAGAAGCT-TCACCTGCGCTCCATCATTGTTGAG 70405 Query 99320 CTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACT 99379 || || |||||||| || || || ||| |||||| | || || || || | Sbjct 70406 CTACTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCC 70465 Query 99380 ATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439 || |||||||||||| | | |||| ||||| || || || ||||| || |||||| Sbjct 70466 ATCTGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTGG 70525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716444610693000