Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq1501 116 6e-21 >seq1501 Length=377221 Score = 116 bits (128), Expect = 6e-21 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 202548 AGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGAC 202607 |||||| || || || |||||||| | | ||||| |||||||| || || |||| Sbjct 69650 AGACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATGCGATTCGATCTGAA 69709 Query 202608 CGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCT 202667 ||| || ||||| || ||||| ||||| ||||| || || || ||||| | ||||| Sbjct 69710 CGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGCATCTGAAGTCGATCATCCTGGAGCT 69769 Query 202668 GCTGTGGTTCCTGAAAGGGGACACCAACATCA----GTTACCTGAACGATAACGGGGTCA 202723 ||||||||||||| |||||| | ||| ||| ||| | ||||| ||| || Sbjct 69770 GCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGAACG----CGGCTGCA 69825 Query 202724 CTATCTGGGACGAATGGGCGCGGGATGA 202751 | ||||||||||| |||||||| || || Sbjct 69826 CGATCTGGGACGAGTGGGCGCGCGAGGA 69853 Score = 107 bits (118), Expect = 3e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| || ||||| || || || || | ||||| ||| ||||| || | || | | Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCTCAGC 70348 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | |||||||| || ||||||| || ||| ||||||| || || |||||| ||||| Sbjct 70349 AAGGGCTTCCCCGTGCTGACCACAAAGAAGCTTCACCTGCGCTCCATCATTGTTGAGCTA 70408 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 || |||||||| || ||||| || |||| | || || || ||| ||| | ||| Sbjct 70409 CTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCCATC 70468 Query 202729 TGGGACGAATGGGC 202742 |||||||||||||| Sbjct 70469 TGGGACGAATGGGC 70482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788298666090000