Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1301 470 2e-127 seq1526 212 9e-50 seq811 183 4e-41 seq368 159 5e-34 >seq1301 Length=515170 Score = 470 bits (520), Expect = 2e-127 Identities = 1200/1808 (66%), Gaps = 30/1808 (2%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| | || ||||||||||| || | ||| || |||| ||||| |||||||| Sbjct 331486 GTACGCAAGTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAA 331545 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 |||| || ||| | | || ||||| || ||||| |||| ||||||||||| ||| Sbjct 331546 GTCAACTTCGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATG 331605 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 ||||| || | |||||| |||| | |||||| ||||||| ||||||||||| || Sbjct 331606 AAAGCACCACGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTC 331665 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| | | | || | || | || | | | | | ||||| | |||||||| | Sbjct 331666 TTGTACAAGTCCTTCAATTCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGCA 331725 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || || |||||| || |||||||||||| | || || ||| | | | Sbjct 331726 GCAATGATGCGATTCTTCATGGATTCATTCCACAATCCCAATTCAGTCAAATCCTTCATC 331785 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 | | |||| || ||||| ||||| |||| || || | |||||||||||| || Sbjct 331786 AAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAA 331845 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || | || || | ||||||||| || | |||||||| ||||||||||| ||||| Sbjct 331846 GTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATG 331905 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGA--TTTTATCTTTTAGATATT 77286 || || | || || ||| | | ||||||| || || | ||| | || | | | Sbjct 331906 GGAGCAAGTAACAAGGAATTACGAACACCATGT--TCAGAAATCTTAGCCTTCAAAGCTG 331963 Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346 ||||||||| | || ||||| |||| ||| | || ||||| | || || || | Sbjct 331964 ACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTTGC 332023 Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 | || || || |||| ||| ||||||| ||| ||| | ||||||| | Sbjct 332024 TCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAG 332083 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC---TT 77463 ||||||| || || || || || || || || || | |||||| | | | || || Sbjct 332084 CTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCGTT 332143 Query 77464 CAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 || | |||||| || | | ||||| || ||||| |||||||| |||||||||| Sbjct 332144 CA---CAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAA 332200 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||| || | ||| | | |||| ||| ||| | | || || |||||||| | Sbjct 332201 TACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGA 332260 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||| || || ||| | || | || || || | || | || | || | Sbjct 332261 CGTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGA 332320 Query 77644 AATCAAA--TCTTCC-ATCTATAACAAA--CATGTTCAAAGCTATAGATGCTAGATTACA 77698 ||||||| | ||| ||| | ||||| || | |||||| ||||| || | ||| || Sbjct 332321 AATCAAAAGTGTTCTTATCCTTGACAAAGGCAGG--CAAAGCAATAGAAGCCAAATTGCA 332378 Query 77699 AACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTT 77758 ||| || | ||||| || | |||| | || || ||||| | ||| |||||| Sbjct 332379 AACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTT 332438 Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 ||| || |||| |||||||| |||||||| |||||| | ||||| || || || | Sbjct 332439 GATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTA 332498 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT 77878 ||||| || ||||||| || ||||| | ||||| ||||| | | ||| | Sbjct 332499 AGGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAAC 332558 Query 77879 CATA-GATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATC 77935 | | || | || ||| || |||| || | ||| | ||| |||||||||| | Sbjct 332559 AACACGACGAGCATGACCT-TCATTTTCGTACTTCTCGTAAAGAGC--TTCAAATTCAGC 332615 Query 77936 TCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC 77995 |||||||||||| ||| ||||| |||||||||||||| | | |||||||| | || Sbjct 332616 ACCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTC 332675 Query 77996 TTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 78055 | | ||| || ||||| || | |||| ||||| | |||| || | || || | Sbjct 332676 AGCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGC 332735 Query 78056 TCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATG 78115 | | |||||| || || || ||||| || | ||| | ||| || | || |||| || Sbjct 332736 ACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTG 332795 Query 78116 CCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATA 78175 ||| ||||| | || | || | | | || || || |||||||| || ||||| | || Sbjct 332796 CCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTA 332855 Query 78176 TCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGT 78235 | || |||||||| ||||| | | ||| |||| || ||| || ||| ||||| || Sbjct 332856 ACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGT 332915 Query 78236 TCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGC 78295 |||||||| || ||| || ||||| || |||| | || || || || || Sbjct 332916 GCCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGC 332975 Query 78296 CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATC 78355 || || || | ||| ||| || || || || || ||||| || || |||||| Sbjct 332976 AGATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATC 333035 Query 78356 CATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATA 78414 ||| || || ||| || || ||||| |||| ||||| ||| || |||| || | Sbjct 333036 AGACATCGTCAACAAG-AAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATGGAAGA 333094 Query 78415 ATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTG 78474 || || || | || ||||| | |||||| | | |||||| | ||||||||| | Sbjct 333095 GGGTGGGTGAACCGTGAGTAAAATACTTTTCACTCATGAAATTGTACGATTCAATAGCCG 333154 Query 78475 ATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTT 78534 | || ||||| || ||||||| |||||||| | ||| || ||||| | || Sbjct 333155 AGTCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATGAGCATGTGTTGAGGACGTT 333214 Query 78535 CAACCGTCTTATT-ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 78593 ||| || | || ||| ||||||| |||||||| ||| | ||| || |||||||| Sbjct 333215 CAA-CGACGCGTTCATTAATTTTCATCAAGTATGCACGTTCAAGAGTCTTGAAACCAAAG 333273 Query 78594 TAGTTGTA 78601 || ||||| Sbjct 333274 TAATTGTA 333281 >seq1526 Length=132622 Score = 212 bits (234), Expect = 9e-50 Identities = 596/910 (65%), Gaps = 14/910 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAGACATAACTCCCATTTTTTG 47854 |||||||||| |||| | || ||| || |||||| ||||| || || ||||| Sbjct 118343 TTAAAAGTCAGCATCAAGAGTGAAAATCTT---TTCTTGTGACATGACACCAGCCTTTTG 118399 Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 || ||||| || || || || || ||||| || |||| ||| || || ||||| Sbjct 118400 GTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCAT 118459 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 47974 ||||| || ||||| || |||| |||| ||| | | | | || | Sbjct 118460 GAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCG 118519 Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| ||||| ||||| || || ||| | | |||||||| || || | ||| Sbjct 118520 ATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAAC 118579 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGT 48094 || | |||||||| || || || ||||| || ||||||| ||| || || || Sbjct 118580 GGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGT 118639 Query 48095 TACCGTTTCCTCACTTGGTGGA---TACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 || || | ||| || || | ||| || | || | ||||| |||||||| Sbjct 118640 TATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATC 118699 Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211 ||||||||||||||| || | || |||| ||| || || || || | ||||||||| | Sbjct 118700 ACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAA 118759 Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 || || || || | ||| || || || || || || || |||||||| || ||||| || Sbjct 118760 CCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCAC 118819 Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAA---CTGGCTTCGTTGTGTATCCACCGTTG 48328 ||| ||||| || ||| | ||||| || || | || || | ||||| || Sbjct 118820 GGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTTTCAATCCAACGCAT 118879 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 ||||| || ||||||| |||||||| || || || || ||||| || || || || Sbjct 118880 AGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTT 118939 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 ||| || || ||| ||||| || | ||| |||||||| | |||||| Sbjct 118940 ACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGAAT 118999 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CG 48507 |||||||| || || || |||||||| || | ||||||| | || || || | Sbjct 119000 GTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTCTTG 119059 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | | ||| || | |||| || ||||| || || |||||| |||||||| || || | Sbjct 119060 TGCGAAA-CGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGCCA 119118 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATAT 48624 | ||| | || ||| || ||| | | ||||| || | ||| | || || | Sbjct 119119 AAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTTTTATGT 119178 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 | || || | || |||||||| || ||||| || || || || || || || || | | Sbjct 119179 CCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTAGAATT 119238 Query 48685 TCCATATATC 48694 ||| ||||| Sbjct 119239 GCCAAATATC 119248 >seq811 Length=1194 Score = 183 bits (202), Expect = 4e-41 Identities = 283/395 (72%), Gaps = 13/395 (3%) Strand=Plus/Plus Query 48365 TTCTATAGCATTAAAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATT 48422 ||||| ||||||||| | |||| ||| ||| |||||||||||||||||| ||| Sbjct 41 TTCTAAAGCATTAAACAATTCTGTTTTCTCA--GCTTCATCTTTAACGTAAGTATCAATT 98 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 || | | |||| ||||| |||||| ||||| || ||||| || || || ||| | Sbjct 99 AATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAAC 158 Query 48483 CTCGCTTCTGTGATCTGTACCTCCG--TACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 ||||||| | || | | || || |||||| | |||||||| || |||||||| | Sbjct 159 TTCGCTTCAG-CATATTGAACTTCGTTTACAAAGT-TCTCAGCCAAGTTTTCATTTACGA 216 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 |||| ||| ||| ||||| |||||||| | ||||||||| |||||| |||| | | | Sbjct 217 TTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCAT 276 Query 48601 TCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657 ||||| |||||||| || | | ||||| | ||| | ||||||||| ||||| | Sbjct 277 TCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGA 336 Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAA 48717 | || || |||||||||| | ||| |||||| | || ||| || ||||||| Sbjct 337 AACTAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAA 396 Query 48718 CAAATCTATTTGGATTTT-TTGCAAGGATAGGTTC 48751 | || | |||| ||||| ||| || ||| ||||| Sbjct 397 CGAAACGATTTTTATTTTCTTGTAA-GATTGGTTC 430 >seq368 Length=262043 Score = 159 bits (176), Expect = 5e-34 Identities = 359/534 (67%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||| || || | ||||| | ||||| ||||| | ||||| ||||||| || || || Sbjct 28307 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 28366 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 ||||||||||| || | ||| || ||||| || || |||||||| || || ||||| Sbjct 28367 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 28426 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC-CACCGTT---GTGCCCAAT 48336 || ||| | ||| || | | ||| ||| |||| | | ||||| | Sbjct 28427 GGCCAAAAGCCGTTCTGGATAGGAAGAGACCC-GTGGATCGCACCACTTCAGAGCCCAGT 28485 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCAT 48396 || || || | || ||||| || || || |||||| | ||| || || ||| Sbjct 28486 GCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAA 28545 Query 48397 TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAA 48456 | ||||| | || || || || ||||| |||| ||| ||||| ||||| || | Sbjct 28546 TCGCGTCTTTGATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGA 28605 Query 48457 TTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATC 48516 |||| || ||||| |||||||| || | || |||| | ||| || || | | ||| Sbjct 28606 TTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAA- 28664 Query 48517 GTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 |||| || | ||| ||||| || || || |||||||||||||| || || | ||||| Sbjct 28665 -TTCATGGCTAGATTTTCATTCACGATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATG 28723 Query 48575 TTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATAT 48634 ||||| ||||| |||||| || || || ||| || || | ||| | | Sbjct 28724 CTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAG 28783 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||| | ||| ||||||||||| || || || || ||||| || ||||| | ||| Sbjct 28784 ATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGCTTTCTTGTACATCTGCCA 28837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694650000525600