Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq1501 125 1e-23 >seq1501 Length=377221 Score = 125 bits (138), Expect = 1e-23 Identities = 222/321 (69%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 100168 TGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCG 100227 |||| || || || ||||| || ||||||||| | ||| | || ||||||||||| |||| Sbjct 113743 TGTCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACATCG 113802 Query 100228 CGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAA-GCCAACATGGCCGTGGGCGAC 100286 || ||||| |||||| || ||| | || || ||| || || ||| | || ||| Sbjct 113803 CGAGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGAC-TGGGGCTCGGGGAC 113861 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 ||| |||||||||| || ||| || | || | || || | || ||| | || Sbjct 113862 TTCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCAGACG 113921 Query 100347 CAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCT 100406 ||||| | ||| ||| | | || | |||| ||||| || |||| | || Sbjct 113922 CAGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGCGTCG 113981 Query 100407 ATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCATT 100466 ||||||||||| |||| || ||||||||| | |||||||| ||| || | || || Sbjct 113982 ATCTTCGACTACGAGTTCGAGGACTTCGAGCTGCAGGACTACCAGCACCACGCGGCGATC 114041 Query 100467 AAAGCGCCGGTGGCGATATGA 100487 || |||||||||||| | ||| Sbjct 114042 AAGGCGCCGGTGGCGGTGTGA 114062 Score = 100 bits (110), Expect = 4e-16 Identities = 172/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGG-CATCAAATGCGTTTTAATTTG-G 99582 ||||| |||||||| ||||| | || | ||| || || |||||||| || ||| | | Sbjct 70289 GACCGAACTGGCACGGGTAC-TCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCTCAG 70347 Query 99583 CTGAAGGTTTTCCTC-TGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGA 99640 | |||| |||| | || | || || ||| ||| |||||| || || || ||| ||| Sbjct 70348 C--AAGGGCTTCCCCGTGCTGACCACAAAGAAGCT-TCACCTGCGCTCCATCATTGTTGA 70404 Query 99641 ACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCAC 99700 || ||||||||||| || || || |||| | | | || ||||| ||| |||| | Sbjct 70405 GCTACTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTC 70464 Query 99701 TATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTG 99760 |||||| | || |||| | ||||| || ||| | || || || |||||||||||||| Sbjct 70465 CATCTGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTG 70524 Query 99761 G 99761 | Sbjct 70525 G 70525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734255328677400