Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq1716 134 4e-27 seq1490 86.0 2e-12 >seq1716 Length=36447 Score = 134 bits (148), Expect = 4e-27 Identities = 175/241 (73%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 26965 CCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTC 27024 |||||| || ||| | || | ||||||||| | || || ||||| |||||||| Sbjct 12020 CCATTTGCGAGTTTGTAGGCGGCCTTCAATATAAACGGGGCGACCTTTTTTGAGGTATTC 12079 Query 27025 ACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTT 27084 ||||||||||| || || || | | | ||||||| ||||||||| || | |||| Sbjct 12080 GCCAGCGATTTCAGCTAGTTTCCGGTACATGACAATATTGTGCCATTCAGTTTTTTCTTG 12139 Query 27085 TGGTTCGCCTGTGGCC----TTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGG 27140 | ||| ||||| ||||||||||| |||||||| ||||||||||||| |||| Sbjct 12140 T--TTC-----TGGCCAGATTTATCTTTCCAGTTTTCGGTGGTGGCAATGCTGAAGTTGG 12192 Query 27141 CAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGATTA 27200 | ||||| | || ||||||||||| || || || || |||||||||||| |||| Sbjct 12193 CGACTGCTTCGCCATTTGGCATGTAGCGTACCTCCGGGTCACGGCCTAAATTACCCATTA 12252 Query 27201 A 27201 | Sbjct 12253 A 12253 >seq1490 Length=214893 Score = 86.0 bits (94), Expect = 2e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 25285 CAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCCGGTTGAGCTATG 25344 ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | Sbjct 101205 CAGGAATCGAACCTGTAACCCCCAGCTTAGAAGGCTGGTGCTCTATCCGGTTGAGCTACG 101146 Query 25345 GG 25346 || Sbjct 101145 GG 101144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134012554532400