Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq1501 201 7e-47 >seq1501 Length=377221 Score = 201 bits (222), Expect = 7e-47 Identities = 256/349 (73%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 1232 TTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGAC 1291 |||||| | ||||| | ||||| | | ||| ||| | |||||||||||||||||| Sbjct 113715 TTCCAGTTCTACGTGGCGGACGGGAAGTTGTCGTGCCAGCTGTACCAGCGCAGCGCGGAC 113774 Query 1292 ATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCG 1351 || ||||| || ||||||||||| ||||| |||||||| || |||| ||| | ||| Sbjct 113775 ATCTTCCTGGGCGTGCCGTTCAACATCGCGAGCTACGCGCTGCTGACGCAGATGCTGGCG 113834 Query 1352 CAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTAC 1411 ||||| ||| ||| || | || || | |||||||| ||||| ||||||||||||||| Sbjct 113835 CAGCAATGCGGACTGGGGCTCGGGGACTTCATCTGGACGGGCGGGGACTGCCACATCTAC 113894 Query 1412 AACAACCACGTCGACCAGGCGCTGATGCAGCTCCGCCGACGA-CCGCGGCCCTACCCGAG 1470 || ||| |||| |||| || || |||||| || ||| ||| | ||||||| Sbjct 113895 GCAAATCACTTCGAGCAGGTGCAGACGCAGCT-GGCGCGCGAGCCGTATGCGTACCCGAC 113953 Query 1471 GCTCGTGCT---ACACCACGCGCCGTCGATCTTCGACTACCGGTACGAGCACATCCACCT 1527 | | ||| | | ||| || ||||||||||||||||| || |||| || || | || Sbjct 113954 GATGGTGATCAAGCGCCAGCCGGCGTCGATCTTCGACTACGAGTTCGAGGACTTCGAGCT 114013 Query 1528 CGTGAACTACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 | ||||| | | ||| || ||||||||||||||||||| || ||| Sbjct 114014 GCAGGACTACCAGCACCACGCGGCGATCAAGGCGCCGGTGGCGGTGTGA 114062 Score = 129 bits (142), Expect = 3e-25 Identities = 271/401 (68%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||| || || ||||||| |||| ||||| ||| |||| | ||| Sbjct 69645 AAGGGAGACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATGCGATTCGAT 69704 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 || | |||||| |||||||| || || |||||| || || | || ||| | | | | Sbjct 69705 CTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGCATCTGAAGTCGAT--CATCC 69762 Query 950 --GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 || || ||||||||||| | || ||| ||||||| ||| | | | || |||| Sbjct 69763 TGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGAACGCGGCT 69822 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 ||| ||||||||||||||||| || | ||| |||| || || || ||||||| || Sbjct 69823 GCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCGGTGTACGGCGTGC 69882 Query 1068 AGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCG 1127 | |||||| ||||| | | | ||| | | | || | ||||||||| | | | Sbjct 69883 AATGGCGGAGCTGGC----CCAAGGCGGGCGGCGGCCATG--TGGACCAGATCGCCGAGG 69936 Query 1128 CCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACG 1187 ||| ||| ||| | |||| || |||||||||| | | || || || ||||||| Sbjct 69937 TGGTGAAGCAGCTGAAGGCCAACCCGGATTCGCGCCGGATCATCGTGTCGGCGTGGAACG 69996 Query 1188 TCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATC 1228 | | || || | | ||||| || ||||||||| || Sbjct 69997 TGGCGGAGCTGGACCAGATGGCGCTGATGCCGTGCCACGTC 70037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296123386300665