Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq1390 172 2e-38 >seq1390 Length=268060 Score = 172 bits (190), Expect = 2e-38 Identities = 248/341 (73%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCC--CCGTACTTCTCGGTGACGTACCTGA 40140 ||||||||| ||||||| ||| | | ||| |||||||| || | |||||| || Sbjct 43666 CCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGTACTCGA 43723 Query 40141 TCAC---GTCGCCCCGTCGCCG-GTCATCGAAGTCGATGTCAACGTCGGGCATGGACACG 40196 | || ||||| || ||| | || |||||||||||| | ||| ||||| ||||| Sbjct 43724 TGACCCGGTCGCG--GTTGCCCTGGCA--GAAGTCGATGTCGAAGTCAGGCATCGACACC 43779 Query 40197 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTG 40256 ||||| ||||||||||| |||||||| | || || | | | ||||||||||| ||| Sbjct 43780 CGCTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTG 43839 Query 40257 ATGCCGAGGCA-GTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCA 40315 || | | ||| ||| ||||||||||| || || |||| || || || || || ||| Sbjct 43840 AT-CAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCACCGG 43898 Query 40316 CACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 |||||| | ||||||||||| ||||||||| | |||| ||||||||| ||||| Sbjct 43899 GCAGCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGGGGAA 43958 Query 40376 CCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCT 40416 |||| || |||||| | ||| |||| ||| ||| ||| Sbjct 43959 GCCCATCTTGATGATGGTCGCGAGCTCGAACTCCAGCCGCT 43999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160136682880120