Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq1501 150 3e-31 >seq1501 Length=377221 Score = 150 bits (166), Expect = 3e-31 Identities = 183/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| || || ||||| || | | |||||||| | ||| |||||||| || | || Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCT-CAG 70347 Query 201908 GAAGGTTTTCCGC-TGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 |||| |||| | || | ||||| || ||| ||||||| || || ||||| |||||| Sbjct 70348 CAAGGGCTTCCCCGTGCTGACCACAAAGAAGCTTCACCTGCGCTCCATCATTGTTGAGCT 70407 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 || |||||||| || ||||| || ||| | | | ||||| ||||||||| |||| Sbjct 70408 ACTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCCAT 70467 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||| ||| | || || ||| | ||||| || ||||| ||||| ||| | Sbjct 70468 CTGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTGGAG 70527 Query 202087 TAGCTGG 202093 | |||| Sbjct 70528 AAACTGG 70534 Score = 114 bits (126), Expect = 2e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| || || |||||||| | || ||||| | |||||||| || | | | Sbjct 69651 GACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATGCGATTCGATCTGAAC 69710 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 || || || ||||| || || || || ||||| || || || ||||||| |||||| Sbjct 69711 GAGGGATTCCCGCTCGTGACGACGAAGAAGGTGCATCTGAAGTCGATCATCCTGGAGCTG 69770 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| || ||| | ||| || ||| ||| | || | | ||| ||| Sbjct 69771 CTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGAACGCGGCTGCACGATC 69830 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||| |||||| | |||||||| | || ||||||||||| ||||||||| Sbjct 69831 TGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCGGTGTACGGCGTGCAATGGCGG 69890 Query 202088 AGCTGG 202093 |||||| Sbjct 69891 AGCTGG 69896 Score = 109 bits (120), Expect = 9e-19 Identities = 189/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 202493 TCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCG 202552 || || ||||| || ||||| || |||||||| ||||| ||||| ||||| ||||||||| Sbjct 113745 TCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACATCGCG 113804 Query 202553 TCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTT 202611 ||||| ||||| || ||| | || || || ||| || ||| | | || ||||| Sbjct 113805 AGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGAC-TGGGGCTCGGGGACTT 113863 Query 202612 CGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAG--CTGACCTC 202669 | ||||||| || || || || | ||| | || || | || || | | ||| Sbjct 113864 CATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCAGACG-- 113921 Query 202670 CAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCC 202729 || || | || || || | ||| |||| | |||| ||||| || |||| | || Sbjct 113922 CAGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGCGTCG 113981 Query 202730 ATCTTCGACTACAAATTCGAAGACTTCGAG 202759 |||||||||||| | ||||| ||||||||| Sbjct 113982 ATCTTCGACTACGAGTTCGAGGACTTCGAG 114011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787981874663400