Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq1501 118 2e-21 >seq1501 Length=377221 Score = 118 bits (130), Expect = 2e-21 Identities = 128/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 200126 TTTTCGGTGCACAGATGCGCTTCAATCT--ACAAGACGGCTTCCCATTGGTGACGACCAA 200183 |||||||| || |||||||||||||| |||| |||||||| || |||| || || Sbjct 70317 TTTTCGGTCACCAAATGCGCTTCAATCTCAGCAAG--GGCTTCCCCGTGCTGACCACAAA 70374 Query 200184 GAAGTGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAA 200243 |||| || || || ||||||||| ||||| | ||||||||| || ||||| || Sbjct 70375 GAAGCTTCACCTGCGCTCCATCATTGTTGAGCTACTTTGGTTCCTTCGTGGAGACACGAA 70434 Query 200244 TATCAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 |||||| | || || || ||||| ||| |||| |||||||||||||| Sbjct 70435 TATCAAATGGCTCAAAGAAAACAACGTCTCCATCTGGGACGAATGGGC 70482 Score = 114 bits (126), Expect = 2e-20 Identities = 219/322 (68%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 200842 TCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGCA 200901 || || |||||||| ||||| ||||| || || || | ||||||||||||||||| || Sbjct 113745 TCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACATCGCG 113804 Query 200902 TCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTG----TCGGTGA 200957 ||||| || |||| || ||| | || || || | ||||| |||| || Sbjct 113805 AGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCA----ATGCGGACTGGGGCTCGGGGA 113860 Query 200958 TTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCT 201017 ||| | |||||||| || ||| ||||||||| |||||| |||||||| | Sbjct 113861 CTTCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCAGAC 113920 Query 201018 GCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTC 201077 ||| ||| | || || ||| | | | |||| | || || || |||||| || Sbjct 113921 GCAGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGCGTC 113980 Query 201078 TATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGAT 201137 |||||||| ||| ||||||| ||||| ||||| | ||| | | || | ||||| Sbjct 113981 GATCTTCGACTACGAGTTCGAGGACTTCGAGCTGCAGGACTACCAGCACCACGCGGCGAT 114040 Query 201138 AAAAGCACCGGTGGCGATATGA 201159 || || ||||||||| | ||| Sbjct 114041 CAAGGCGCCGGTGGCGGTGTGA 114062 Score = 89.7 bits (98), Expect = 8e-13 Identities = 195/289 (67%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 200848 CAGCTGTATCAGCGTAGCGCTGATATGTTTT--TAGGCGTGCCGTTCAACATTGCATCAT 200905 ||||||||||| || | || ||||||| | || || |||||||| || || | Sbjct 70715 CAGCTGTATCAACG--GTCTTGCGATGTTTTCCTTGGTGTACCGTTCAATATCGCCAGTT 70772 Query 200906 ACGCACTACTGATTCACATGGTA---GCCCAACAGGTCAATATGACTGTCGGTGATTTCG 200962 | |||||||| ||| ||| | ||||| ||| | | || ||| ||||||| Sbjct 70773 ATGCACTACT---TCAGATGATGCTCGCCCAGCAGTGCGGTTTGGAACCCGGCGATTTCG 70829 Query 200963 TATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTGCAAC 201022 | ||||| || || ||||| ||||||||||||||||| || || || |||| Sbjct 70830 TTTGGACCGGCGGCGACGTGCACATCTACAGCAATCATTTCGACCAAGTGAAGTTGCAGA 70889 Query 201023 TGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCTATCT 201082 |||| || || | ||||| | |||||| |||| || || || ||||| || || ||| Sbjct 70890 TGTCGCGAGACACTCGTCCGCTTCCGAAGATGAACATCCTGCGAAAGCCAGAATCCATCA 70949 Query 201083 TCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCC 201131 || ||| | || || || || | || | ||||| |||||||| Sbjct 70950 ATGACTACCGTCTTGAGGATTTCCAGTTGACCGACTACGACCCGCATCC 70998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783338800320000