Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq1501 134 2e-26 >seq1501 Length=377221 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| || |||||||| || | ||||||| | || ||||| || | || || Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCTCAGC 70348 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 || || ||||| || | ||||| || ||| | |||||||| || ||||| || || Sbjct 70349 AAGGGCTTCCCCGTGCTGACCACAAAGAAGCTTCACCTGCGCTCCATCATTGTTGAGCTA 70408 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | |||||||| || ||||| || ||| | | || ||||| ||||||||| ||| Sbjct 70409 CTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCCATC 70468 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||||| || ||||| ||||| |||| || || |||||||||||||| ||||||||| Sbjct 70469 TGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTGG 70525 Score = 100 bits (110), Expect = 4e-16 Identities = 183/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 196750 TGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCG 196809 |||| || ||||| ||||||||||| || ||| ||||||| || || ||||||||||||| Sbjct 113743 TGTCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACATCG 113802 Query 196810 CTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATT 196869 | ||||| ||| || || ||| |||| ||||| | ||| | || || | Sbjct 113803 CGAGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGACTGGGGCTCGGGGACT 113862 Query 196870 TCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGC 196929 || ||||||||||||| || ||| | ||| | || || | || |||| | || Sbjct 113863 TCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCAGACGC 113922 Query 196930 AGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCCA 196989 |||| | || | ||| ||| || | | | || ||||| || | |||| || | Sbjct 113923 AGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGCGTCGA 113982 Query 196990 TTTTCGACTATAAGTTCGAAGATTTTGA 197017 | |||||||| ||||||| || || || Sbjct 113983 TCTTCGACTACGAGTTCGAGGACTTCGA 114010 Score = 93.3 bits (102), Expect = 7e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 196101 TTCGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAG 196160 ||||| |||||||||| || || ||| | | || |||||||| || || || || ||| Sbjct 69681 TTCGGTCATCAGATGCGATTCGATCTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAG 69740 Query 196161 TTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATC 196220 |||| ||| || ||||||| || ||| ||||||||||| ||| ||| | ||| || Sbjct 69741 GTGCATCTGAAGTCGATCATCCTGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTC 69800 Query 196221 CAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGAT 196280 ||| || | || | | || |||||||| |||||||| || || || || Sbjct 69801 AAGTGGTTGCAGGAACGCGGCTGCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGAC 69860 Query 196281 CTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 || || || || ||||| ||| ||||| Sbjct 69861 CTGGGGCCGGTGTACGGCGTGCAATGGCG 69889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770286353561400