Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq280 132 3e-26 seq1501 107 1e-18 >seq280 Length=85134 Score = 132 bits (146), Expect = 3e-26 Identities = 217/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 96694 ACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAAT 96753 ||| ||| | || ||||| || | | ||| ||| |||| | || | || ||||| Sbjct 11681 ACCTGCAAAATTTTCAAAGCGGGTATGTTGACCGATAAATGTCAGGCGAACACGACCAAT 11622 Query 96754 TGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGG 96813 |||||| || || ||||| | ||||| | || || |||| || | |||||| || Sbjct 11621 TGGGCCGTTACGCTGCTTGGCAATAATGATTTCAGCGGTGCCTTTGTCTGGGCTATCTGG 11562 Query 96814 GTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCC 96873 || ||||||||| || ||||| | ||||| || | ||| || ||||||||||| || || Sbjct 11561 GTTATAAACTTCATCACGATAAATAAACAGAATAACGTCCGCATCCTGCTCAATCGCACC 11502 Query 96874 TGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTG-TTCAAGCGATCGAT 96932 |||||||| || || || | || || |||||||| | || || | ||||| | |||| Sbjct 11501 AGATTCACGCAAGTCAGACATCACAGGACGTTTGTCGGGGCGTTGCTCCAAGCCA-CGAT 11443 Query 96933 TAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGC 96992 | | |||||||| || || || || || | | || || ||||||| || | |||| Sbjct 11442 TTAACTGTGACAACGCTACTACTGGCACATTCAGCTCTTTTGCCAACGATTTTAAAGAGC 11383 Query 96993 GAGAAATCTC 97002 | || || || Sbjct 11382 GTGAGATTTC 11373 >seq1501 Length=377221 Score = 107 bits (118), Expect = 1e-18 Identities = 235/346 (68%), Gaps = 11/346 (3%) Strand=Plus/Plus Query 96741 TCACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCT--T 96798 |||||||||| | ||||| || || ||||| |||| || | ||| || | |||| | Sbjct 328487 TCACCGTGCCCACCGGGCCGTTCCGCTGCTTGGCGATGATGATCTCCGCCACGCCCGGCT 328546 Query 96799 CATTTCGCTA-TCCG-GGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCG 96856 | || | || ||| |||| ||| ||||||| || | |||||||| | ||| ||| Sbjct 328547 CCTTGCACTCGTCCTTGGTGTAGTACT-CGTCGCGGTAGATGAACATGATGATGTCCGCG 328605 Query 96857 TCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGC 96916 |||||||| || || || || || || | || || | | ||| || ||||||| ||| Sbjct 328606 TCCTGCTCGATGGCGCCCGACTCGCGCAGGTCGGACATCATCGGACGCTTGTCCGGCCGC 328665 Query 96917 TGTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCC 96976 ||| | ||| || || || || |||| || | |||||| | | ||||| ||| Sbjct 328666 GTTTCCACCGAGCGGTTCAGCTGCGACAGCGCGATCACCGGGCAGCGCAGCTCCTTGGCC 328725 Query 96977 AACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTT--GCAGCT 97034 | ||||||||| || || |||||| | | || || ||||| || | | | | Sbjct 328726 AGCGCCTTCAGGCCCCGCGAGATCTCGCCCACCACCGTCGCCCGGTTCTCCTCGGAACCG 328785 Query 97035 CCG----GGACGCGCATAAGTTGCAGGTAGTCGATCATAATCATGC 97076 ||| | ||| ||| || |||||||||||||| || |||| || Sbjct 328786 CCGCCGTTGCCGCTCATCAGCTGCAGGTAGTCGATGATGATCAGGC 328831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330890468914390