Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq100 535 5e-147 >seq100 Length=112360 Score = 535 bits (592), Expect = 5e-147 Identities = 674/926 (73%), Gaps = 0/926 (0%) Strand=Plus/Plus Query 183254 TGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||||||| || || || |||| || | || ||||| | | || |||| |||| Sbjct 40210 TGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATCGGTTTTATCGCAGCTC 40269 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || ||||| || || || ||||| || || ||||| || || | |||||||||| Sbjct 40270 CTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCCCTATTATATGGAAACA 40329 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 |||| || | || || || ||||| ||| ||||||||||| |||| || ||||| | Sbjct 40330 ACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGTGTTCATTTTTATCCTA 40389 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| || || | ||||| ||| | |||||||||||||| || ||||| ||| Sbjct 40390 TATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGTCCATATCAACTGATAG 40449 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | || |||||| | | || || || || | ||||||||||||||||| | | Sbjct 40450 TATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAGTGGGAATTAAGCTTTC 40509 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 | | || ||||| |||||||| | |||||| | | ||| || || ||||| ||||| | Sbjct 40510 GCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCAGTAGCTGCAGCAACAG 40569 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| | | ||||| | || ||||| |||| |||||||||||| | || | Sbjct 40570 CTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGATGGTATGCCTTTAGGGA 40629 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 | || || ||||||| ||| | || |||||||| ||||| ||||| | ||||| | Sbjct 40630 TTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCATAACATATTAATGCATC 40689 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| ||||| ||||| || || || ||||| | || ||||||||||| Sbjct 40690 CATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTATTTTCTGCAATGCACG 40749 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 | ||| | || ||||| || | |||||||||| |||| || |||| || |||| Sbjct 40750 GATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGCGAATCACCAAATTATG 40809 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 | ||||| || || ||||||||||| || || || ||||| |||||||| ||||| || | Sbjct 40810 GATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCTGCTCACGGATATTTCG 40869 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | | | || || || || || ||||| || || ||||| | ||||||||| | | Sbjct 40870 GAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCATTACACTTCTTCTTAG 40929 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 |||| |||||||| || || || ||||| ||||| | || |||| || ||||| |||| Sbjct 40930 CTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATTAGTACAATGGCCTTTA 40989 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 || | || || |||||||| || || || || |||||| | ||||| | || | |||| Sbjct 40990 ACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATTAACA 41049 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | |||||||| || | ||| | || |||||| || ||||| ||||| || ||||||| Sbjct 41050 CTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAACGTAATG 41109 Query 184154 CTCACAACTTCCCTCTCGACCTTGCT 184179 |||| |||||||| | || |||||| Sbjct 41110 CTCATAACTTCCCATTAGATCTTGCT 41135 Score = 473 bits (524), Expect = 1e-128 Identities = 713/1008 (71%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||||| ||| ||| | ||||| ||||| || |||||||| ||| | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 186033 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGG 186092 || || ||| | || | || || ||| ||||||| | || |||||||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 186093 TATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTG 186152 |||||||| || || || || | | || ||| ||||||| | ||||| || || Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 186153 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 186212 ||||| || ||| | |||||| |||||| | ||||| | ||||| || || | ||| Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 186213 GGAGATATCATCCGC-TGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 186271 ||| || | || | ||||| || |||| || || |||| ||||| || | ||||| Sbjct 28826 GGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGG 28884 Query 186272 AGCCTTTGCTCTCATAGGTTTCATGCTG-CGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 ||| ||||| || || || || |||| ||||| |||||||| ||| | ||||| | Sbjct 28885 AGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAA 28943 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | || || |||||||| | || ||||| | || ||||| | |||||| || || Sbjct 28944 TTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTT 29003 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | | || ||| | || || | ||||| || || || ||||| || ||||||| Sbjct 29004 TACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAA 29063 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | ||| |||| | | ||| | ||||||||||| || ||||| || ||||||||||| | Sbjct 29064 TTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATA 29123 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| || || || | | || | ||| | || | ||||| ||||||| ||||| Sbjct 29124 TGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTG 29183 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 | ||||||||||||||||||||||| || |||||| ||||| | ||| || | | Sbjct 29184 TTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTA 29243 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | ||| |||||||| ||||| ||||| || || |||||||| |||||||| || || | Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 || | || ||| |||||| | ||| | || || || ||||| ||||||||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | ||| | | || || ||| | || ||||| | ||| | || || ||||||| Sbjct 29364 GTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACT 29423 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 || | || || | |||||||||| ||||| || ||||| || |||||||| || | Sbjct 29424 TTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAA 29483 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 |||| | || |||||||| || | |||||||| || || || |||||||||| Sbjct 29484 ATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAA 29543 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTGAT 186978 | | | ||||||| ||||| || || ||| | || ||||| || |||| Sbjct 29544 ATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 184030 TTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTG 184089 |||||| | || || |||||||| || || || || |||||| | ||||| | || | Sbjct 112349 TTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATT 112290 Query 184090 AACACCTGGGC-AGACGT-TCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGC 184147 ||||| ||||| ||| | | | ||| | || |||||| || ||||| ||||| || | Sbjct 112289 AACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAAC 112230 Query 184148 GTAATGCTCACAACTTCCCTCTCGACCTTGCT 184179 |||||||||| ||||||| | | || |||||| Sbjct 112229 GTAATGCTCATAACTTCCAT-TAGATCTTGCT 112199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622053565219800