Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq100 497 1e-135 >seq100 Length=112360 Score = 497 bits (550), Expect = 1e-135 Identities = 686/960 (71%), Gaps = 0/960 (0%) Strand=Plus/Plus Query 163970 GGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGACTACATGTTTCATCATC 164029 || |||||||| || |||||||||| || | |||| |||||||||||||| ||| Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 164030 GCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCG 164089 | || |||| |||||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 164090 CTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGT 164149 || | |||||||||||||| || | || | |||| ||| ||| ||||| || ||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 164150 CTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGT 164209 | || || || || || |||||||| || | | || |||||| | || ||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 164210 CCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAG 164269 || | ||||| | || || |||||| | | || | | ||| | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 164270 TGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCT 164329 |||||| | | || | || ||||| |||||||||| || || | || ||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 164330 GTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 164389 || |||||||| | || || ||| | | ||||| | || ||||| ||| |||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 164390 GCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCAC 164449 | |||||| | || || || || || || |||| |||||| || ||||| || ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 164450 AACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTG 164509 ||||| | ||||| || || || ||| || ||||| || || ||||| ||||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 164510 TTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAT 164569 || |||||||||||| || | || ||||| || | ||||||| || | |||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 164570 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCC 164629 || || | || ||||| ||||| ||||| || ||||||||||| || || || ||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 164630 GCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 164689 |||||||| || || || | | ||||| |||||||| || || ||||| ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 164690 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTT 164749 | ||||||||| | || |||||||| || || || || ||||| ||||| | || || Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 164750 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 164809 || || ||||| || ||| | ||||| || ||||| || || || || || ||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 164810 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTG 164869 || | || | ||||| |||||||| || | ||| | || ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 164870 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGAACACTCCT 164929 ||||| || ||||||||||| |||||||| | || |||||| | ||| ||| || || Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCTTTTTCTGTTAACTCTACT 41153 Score = 457 bits (506), Expect = 1e-123 Identities = 712/1007 (71%), Gaps = 8/1007 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTT-TT 165223 || |||||||| |||| |||| | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 165224 TCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 165283 ||| || ||| | ||||| || || ||| ||||||| | || || || || ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 165284 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGT 165343 |||||| || || | || || |||| | | || ||| || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 165344 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 165403 ||| || ||||| | |||||| |||||| | || ||| ||||||| || || | || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 165404 AGGGGACTTCATCCGC-TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 ||| | || || | |||| || |||| || || ||||| ||||| || | |||| Sbjct 28825 AGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGT 165521 |||| |||||||| || || || ||||| || || |||||| | || ||| | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 165522 ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTT 165581 ||||| |||||||||||| | || || || | || || || | || ||| |||||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 165582 CTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 165641 | | |||||| | || ||| | |||||| || ||||| || || || |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 165642 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCAC 165701 || || ||||| | || ||| | ||||| |||||||| ||||| | ||||| || || Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 165702 ATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACA 165761 |||||||| || || || | ||||| | || || || | ||| |||||||||| ||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 165762 GTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGT 165821 || || |||||| | ||||||||||| || |||||| || || | ||| ||| | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| || ||||| ||||||||||| || || ||| | || ||||| || |||||| Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 || | ||||| |||||| | ||| | ||||| |||||||| ||||||||||| | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | ||| |||| | || || || | || || ||| | || | || || ||||| Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 166002 TTTGTGTCTCAGGAGATTA-GAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAA 166060 ||| | || || || |||| |||| || || ||||| || || ||||| |||||||| || Sbjct 29423 TTTATTTCGCAAGA-ATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAA 29481 Query 166061 AAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGA 166120 ||| || | | ||||||||| | | ||| ||||| | |||||| || ||||| Sbjct 29482 AAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGA 29541 Query 166121 GAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTT 166167 || | | | || || ||||| || || ||| | || ||||| |||| Sbjct 29542 AAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTT 29588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557639308477800