Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1355 100 7e-16 >seq1355 Length=184863 Score = 100 bits (110), Expect = 7e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTT-TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||| ||||| || ||||| ||| ||||||||||| ||| ||||| | || || || Sbjct 90902 ACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTC 90961 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || || || || || || | |||||||| | | ||||||||||| || || Sbjct 90962 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 91021 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || || | || | ||| ||| ||| || |||||||| || || || Sbjct 91022 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTT 91081 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||| ||||| | |||||| Sbjct 91082 TCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || ||||| || ||||||||||| ||| | ||| | || || || Sbjct 90674 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90733 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || || | |||||||| | | ||||||||||| || ||| Sbjct 90734 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGA 90793 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || || || | || | ||| ||| ||| || |||||||| || || || Sbjct 90794 ATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTT 90853 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||| ||||| | |||||| Sbjct 90854 CCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 96.9 bits (106), Expect = 8e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| |||||||| |||||||| ||||||||||| ||| | ||| | || || || Sbjct 90446 ACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCC 90505 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || || | |||||||| | | ||||||||||| || | | Sbjct 90506 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAA 90565 Query 152016 ATT--TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 ||| || || || || | || | ||| ||| ||| || |||||||||||||| | Sbjct 90566 ATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAA-GCTCAACGTCAAGAGTAATAGTCT 90623 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| | |||||| || || | |||||| Sbjct 90624 TTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT-CTCCCATCTTC 151954 ||||| ||||| || ||||| || ||||||||||| ||| |||||| | || || || Sbjct 91131 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCTC 91190 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || || || || || || | |||||||| | | ||||||||||| || || Sbjct 91191 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 91250 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || || | || | ||| || |||||| || ||||| || || || Sbjct 91251 AATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTT 91310 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 ||||| || ||||| || || | ||||||| || Sbjct 91311 TCCCGTCAGCGTCTTTACAAAAATCTGCATTGTA 91344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153788794092715