Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq100 527 7e-145 >seq100 Length=112360 Score = 527 bits (584), Expect = 7e-145 Identities = 682/942 (72%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 177640 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTC 177699 || |||||||| || ||||||| |||||||| | | ||| ||| |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 177700 GCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCC 177759 | ||| |||| |||||||| || ||||| || || || || || || || ||||| ||| Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 177760 CTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGT 177819 || | ||||| |||||||| ||| | || | || ||||| ||| ||||| |||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 177820 CTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGT 177879 | || || ||||| || |||||||| |||||| | ||||| ||| | || || |||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 177880 CCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAG 177939 || | ||||| | | || |||||| | | ||| | | || | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 177940 TGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCA 177999 |||||| | | ||| |||| ||||| || ||||| | ||| || | || |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 178000 GTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 178059 || || |||||| | ||||||||| | ||||||| | || ||||| ||| ||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 178060 GCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 178119 | |||||| | || || || || || |||| |||| | || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 178120 AACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTG 178179 ||||| | ||||| || || |||||| || || ||||| || ||||| ||||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 178180 TTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAAC 178239 || ||| |||||||| ||| | || ||||| || | |||||||||| | || | | Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 178240 GAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 178299 ||| | || ||||| ||||| || || ||||||||||| || || || || |||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 178300 GCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCG 178359 ||||| || || ||||| | | || || ||||||||| || || ||||| ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 178360 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTT 178419 | ||||||||| | || |||||||| || || || || ||||| ||||| | || || Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 178420 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAG 178479 || || ||||| || ||| | ||||| || ||||| || || || || || ||||| || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 178480 GGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTC 178539 || | ||| | ||||| |||||||| || | ||| | || |||||| || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 178540 ATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||| || ||||||||||| |||||||| | || || ||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 464 bits (514), Expect = 7e-126 Identities = 719/1014 (71%), Gaps = 16/1014 (2%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCT--GT 178908 ||||||||||| || || | || || ||||| || ||||| ||| || || | | Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 178909 TCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGT 178968 ||| | | || || | || || || || ||| | || || | ||||| || ||||| | Sbjct 28645 TCCGTGC-GCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTT 28703 Query 178969 GGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTG 179028 ||||||| || || | ||| || | | | || || |||||||| | || ||||||| Sbjct 28704 GGTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTG 28763 Query 179029 TATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTC 179088 | ||||| || ||| | | | |||||||| |||||||| ||||||| |||||||| | Sbjct 28764 TTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGC 28823 Query 179089 AGGGAGATTTCGTCCG-CTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCAC 179147 | ||| |||| || | ||| | || |||| || || ||| | ||||| || | ||| Sbjct 28824 AAGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACAC 28882 Query 179148 GGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCGCACGTCTAGTCGG 179206 || || || || || || || || ||||| || || |||||||| || || |||| || Sbjct 28883 GGAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 179207 TATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTT 179266 ||||| ||||||||||| | || ||||| | || || || | ||||| || ||||| Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 179267 TCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGC 179326 | | | |||||| | || || | ||||| ||||| || ||||| |||||||| Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGC 29061 Query 179327 GATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCA 179386 ||||| || || |||| ||| |||| || ||||| || ||||| | || || ||||| Sbjct 29062 AATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCA 29121 Query 179387 CATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTAC 179446 |||||||| || || || | | || | || || || ||||| |||||||||||||| Sbjct 29122 TATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTAC 29181 Query 179447 AGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCC 179506 || || || || || | |||||| | || | |||||||||| | || || || Sbjct 29182 TGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCC 29241 Query 179507 TACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTT 179566 ||| ||| || || || ||||| |||||||| |||||| | || ||||| || || || Sbjct 29242 TACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTT 29301 Query 179567 TGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCAT 179626 ||| | || || |||||| | ||| |||| || |||||| | ||||||||||| | Sbjct 29302 TGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAAC 29361 Query 179627 GGGTCTTTGGACCTCTAGC---ATTGGTATTATTGGTCTTGCACTTAACCTTA-GAGCTT 179682 ||| | ||| | ||| || || ||| | || |||||| |||| |||| | || | Sbjct 29362 CGGTTTATGG---GCAAGCGCAATAGGAATTGTAGGACTTGCA-TTAAACTTACGCGCCT 29417 Query 179683 ATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATA 179742 |||||||| |||| ||||| | |||| ||||| ||||| || ||||| || ||||||| Sbjct 29418 ATGACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATA 29477 Query 179743 CCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCAC 179802 | || || || | || |||||||| || | |||||||| || || || |||| Sbjct 29478 CAAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCAC 29537 Query 179803 ATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 179856 ||||||| | | ||||||| ||||| ||||| ||| | || ||||| || |||| Sbjct 29538 ATGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596291062436400