Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq100 495 4e-135 >seq100 Length=112360 Score = 495 bits (548), Expect = 4e-135 Identities = 720/1009 (71%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTT-TT 170665 ||||||||||| ||| || | ||||||||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGG-TTTATTATTATT 28644 Query 170666 TCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTG 170725 ||| || ||| | || | || || ||| |||| || | ||||||||||| ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 170726 GTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGT 170785 ||| ||||| || | || || || | | |||||| |||||| | || || ||||| Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 170786 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 170845 ||||| || ||| || |||||| |||||| | ||||| | ||||| || || | || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 170846 GGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 170905 || |||| ||||| || |||| || || |||| ||||| || | ||||| Sbjct 28825 AGGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGG 28884 Query 170906 AGCCTTTGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 ||| ||||| || || || || ||||| || || |||||||| ||| | ||||| | Sbjct 28885 AGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAA 28943 Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 || |||| |||||||| | || || || | || ||||| | ||||| ||| || Sbjct 28944 TTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTT 29003 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | | |||||| | ||||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 29004 TACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAA 29063 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | || || || | || ||| | ||||| ||||| || |||||| | |||||||| |||| Sbjct 29064 TTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATA 29123 Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204 ||||||| ||||| || | | || | ||| || || | |||||||||||||| ||| | Sbjct 29124 TGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTG 29183 Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGA 171264 | || |||||| | ||||||||||| ||| |||||| || |||| || ||| | | | Sbjct 29184 TTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTA 29243 Query 171265 CTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTG 171324 |||| |||||| |||||||| ||||| || || || | || ||||| || ||||||| Sbjct 29244 CTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTG 29303 Query 171325 GTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGG 171384 | | || || |||||| | ||||| || || |||||||| ||||||||||| | | Sbjct 29304 GAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCG 29363 Query 171385 GTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGAT 171443 || | |||| || | || ||| | || ||||| |||| |||| | || ||||| Sbjct 29364 GTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTATGAC 29422 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 || | || || | |||||||||||||||| || ||||| || |||||||| || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || | || |||||||| | | ||||||||| || |||||| ||||||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || | | | || ||||| || || |||| ||||| || || ||||||| Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Score = 486 bits (538), Expect = 2e-132 Identities = 673/942 (71%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 169394 GGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATC 169453 || |||||||| || ||||||| || || | |||| || || |||||||| ||| Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 169454 GCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCT 169513 | || |||| ||||| || || ||||| || || || ||||| || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 169514 CTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGT 169573 || | ||||| |||||||| || | || | || | || ||| |||||||| ||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 169574 CTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGT 169633 |||| || ||||| || |||||||| || | | ||||||||||| || ||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 169634 CCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAG 169693 || | |||||| | || || |||||| | | || | | ||| | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 169694 TGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCC 169753 |||||||| || ||| | || |||||||||||||| | |||||| | || ||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 169754 GTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGAC 169813 || || ||||| | ||||| ||| | | || ||| | || ||||| || ||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 169814 GCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCAC 169873 | ||||||| | || || || || || ||||||| |||| | || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 169874 AACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTG 169933 ||||| | ||||| || || |||||| |||||| || ||||| ||||| || || | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 169934 TTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAAC 169993 ||| || |||||||| | || ||||| || | |||||||| | || | | Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 169994 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCC 170053 || || | || ||||| ||||| || || ||||||||||| || || || || ||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 170054 GCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCA 170113 |||||||| || ||||| | | || || |||||||| || || ||||| |||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 170114 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTC 170173 | ||||||||| | || |||||||| || ||||| || ||||| || || | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 170174 TCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 170233 || ||||| || ||| | ||||| || ||||| || || || || || ||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 170234 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 170293 || | || | ||||| |||||||| || | ||| | || |||||| || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 170294 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335 ||||| || ||||||||||| |||||||| | || || ||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592182373630800