Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1422 178 3e-39 seq1110 154 3e-32 seq1355 147 5e-30 seq1775 134 3e-26 seq1525 98.7 2e-15 seq2 98.7 2e-15 seq1491 95.1 3e-14 >seq1422 Length=277306 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| ||||| ||||| || | ||| | || || || || ||||||||||| Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| || || || |||||||| |||| ||| || || ||| ||| Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| |||||| ||||||| | |||||||| ||| || Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||||||| |||| |||||| ||||| || |||||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| ||||||||||| || | ||| || || || || ||||||||||| Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| || || || || |||||||||| ||| || || ||| ||| Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| ||||| | ||||| | ||||| | || || Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| ||||||||||| || || || ||||| Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/169 (69%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || ||||||| || ||||| || || || || |||||||||| ||| || || ||| | Sbjct 271719 CAGGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTG 271660 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || |||||||| ||||||||| ||||| | ||||| | Sbjct 271659 GAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGNNNNNNNNNNNNNNN 271600 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||||||||| ||||||||||| || || || ||||| Sbjct 271599 NNNNNNGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271551 >seq1110 Length=486086 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| ||||||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 ||||| || |||||| |||||| || |||||||| ||||| || ||| ||||| | || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTTACATTGTC 256172 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | ||| || || || || || ||||| |||||||| ||||| || || Sbjct 256171 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAA 256112 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 256111 AATCTGCAT 256103 >seq1355 Length=184863 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || | || || || | || || || |||||||||||||| Sbjct 90656 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 90715 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| | || || || ||||| || | |||||| |||||| ||| Sbjct 90716 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90775 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||| || ||| | ||||| | ||| |||| || || Sbjct 90776 ATTCCTTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 145 bits (160), Expect = 2e-29 Identities = 172/229 (75%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGTTGTAGTCAGC 282931 || |||||||| || | || || || | || | | |||| |||||||||||||| Sbjct 90884 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCT 90943 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||| ||||| | || || || ||||| || | |||||| |||||| || Sbjct 90944 CAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 91003 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| || ||||| ||| || ||| | ||||| | ||| |||| || | Sbjct 91004 AATTCCTTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 134 bits (148), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || |||||||| || | || || || | || || || |||||||||||||| | Sbjct 91113 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 91172 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | ||||| ||||| | || || || ||||| || | |||||| |||||| || Sbjct 91173 AAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 91232 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| || ||||| ||||| ||| ||||||| | ||| || | || | Sbjct 91233 AATTCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | ||||||||||| ||||| ||||||| ||||| || || ||||||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATT 91341 Score = 132 bits (146), Expect = 1e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| | || || || | || ||||| |||||||||||||| Sbjct 90428 CCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 90487 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| | || || || ||||| || | |||||| |||||| ||| Sbjct 90488 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90547 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT--TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| | || | | || || || | ||||| | ||| ||||| || | Sbjct 90548 ATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAGC-TCAA 90605 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| || ||||| |||||||||||||| || || |||||||| Sbjct 90606 CGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 >seq1775 Length=332822 Score = 134 bits (148), Expect = 3e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || | || || || | ||| |||||| || || |||||||| || Sbjct 274999 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGC 274940 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || || || || || |||||||||| ||| || ||||| || Sbjct 274939 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 274880 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || || || ||| || | || || | ||||| | || || Sbjct 274879 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 274820 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || || || ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTTC 274768 >seq1525 Length=339361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| |||||| |||| || | || ||| ||||||||||||||||| | Sbjct 204809 ACCACCACGCAAGCGAAGAACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCGGA 204868 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| || || || || || ||||| || || ||||| |||||||||||||| || Sbjct 204869 AAGGGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATCAAACGTTGTTGATC 204922 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| ||||||||||| || || | ||| || | || || | |||||| | |||||||| Sbjct 205037 TACCTTCCTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGAGTCCGAGGATTCGACTT 205096 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 205097 CCAAAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 205142 >seq2 Length=153960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 301430 TGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGT 301489 |||| ||||| |||||||| |||||||| |||||| ||| || || || || || | Sbjct 57860 TGGATCCCTACATCAACGTGGATCCGGGCACGATGTCGCCGTTCCAGCACGGTGAGGTCT 57801 Query 301490 TCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCA 301546 |||| ||||| || || || || ||||| ||||| ||||| ||||||||||| |||| Sbjct 57800 TCGTCACGGACGACGGCGCGGAGACCGACCTGGACCTGGGCCACTACGAACGCTTCA 57744 >seq1491 Length=35835 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/172 (74%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 317030 GGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCAT 317089 |||| ||||| | |||||| ||| ||| || | ||| || |||||||||||| ||| | Sbjct 26534 GGAAGCCTTCGAGCTGACCATTCGAAATGGCGCGCATGAGGGTCGACTTGCCACAACCGT 26593 Query 317090 TGGGGCCGCA-AAGACCATACCGATTTCCCTTCTTCAGA--TTAAAACGGGTGTTGTTCA 317146 | || ||||| |||||| || |||| || ||| ||| || ||||| ||||| | Sbjct 26594 TAGGACCGCACAAGACCGTAACGATGACCACGCTTTAGACCGAAAGACGGGCATTGTTGA 26653 Query 317147 GAAGAATCTTACCACCATATGCCAGAGAGAAC-TCACA-ATCACACAGGTCC 317196 | | |||| |||| ||||| || || |||||| ||||| | ||| |||||| Sbjct 26654 GTAAAATCATACCGCCATAAGCGAGCGAGAACTTCACAGTTTACAAAGGTCC 26705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046710164435910