Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1526 161 1e-34 seq811 134 1e-26 seq368 96.9 4e-15 >seq1526 Length=132622 Score = 161 bits (178), Expect = 1e-34 Identities = 396/598 (66%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 || || ||||| |||||||||||||| || ||||| || | || || | |||||| || Sbjct 118680 AATAACAAACAGGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAG 118739 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || || || ||||| || || || || || | ||| || || ||||||||||| ||| Sbjct 118740 AAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCG 118799 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 |||||||| ||||| || || || ||||| || ||||| ||| ||||| | | Sbjct 118800 GAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTT 118859 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | || |||||| | | ||| | ||||| ||||| || || ||| Sbjct 118860 TGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCA 118919 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAATTAGTA 23797 || || || || || || ||| || | | || || || |||||||| || | Sbjct 118920 ATGGCATTGAAAAGGAA--TTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGA 118977 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 | |||||||||| ||||| |||||||| || || ||||| ||||| || | || Sbjct 118978 GAGAGTACATTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAG 119037 Query 23858 CTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCAT 23917 |||| | | |||||| || | || | || | || ||||| || |||||||||| Sbjct 119038 CTTCTGGAACTTGAACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCAT 119097 Query 23918 CACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATT 23977 || |||||||||||||| | |||| | ||| || |||||| | | || | Sbjct 119098 CAGAGGCAGCAAAGAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACT 119157 Query 23978 TT---TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTG 24034 || | ||||| || || || || || | |||||||| || | ||||| || | Sbjct 119158 TTTCGTCCCAATGTTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAG 119217 Query 24035 CCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 | || ||| || | | |||||||||| | || | || ||||| | ||||| Sbjct 119218 CTTCAGCCTTCTTGTAGAATTGCCAAATATCGTGATACTTGATGGGAAAGAGGACGAA 119275 >seq811 Length=1194 Score = 134 bits (148), Expect = 1e-26 Identities = 234/339 (69%), Gaps = 5/339 (1%) Strand=Plus/Plus Query 23758 GTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGA 23817 ||||| || | | |||| | | || |||||||||| |||| |||| |||| ||| Sbjct 63 GTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGTGA 122 Query 23818 ATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCA 23877 || ||||| || |||||| || ||||| ||| | | ||||||| ||||||| || Sbjct 123 ATGTTTTCCATCATAATCTGGAAACCATAGAAAAACTTCGCTTCAGCATATTGAACTTCG 182 Query 23878 TTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCA 23937 || | ||| | | ||| || ||||| || || || || ||| ||| |||||||| || Sbjct 183 TTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCT 242 Query 23938 AGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT----TTCCAATCATTAAT 23993 | || || ||| || |||| ||||||||| || | | ||| |||||||| | | Sbjct 243 AAAATATGTTTAATGAAATATCTTTCATC-GTCATTCAGTTTGTTATTCCAATCTGTCAA 301 Query 23994 ATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACAT 24053 ||||| ||||| | ||| ||| | ||||| ||||| || |||||| Sbjct 302 ATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAACTAGCTTCCATTTTTTTATACCA 361 Query 24054 TAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 | ||||||||||| ||||| || ||||| || ||||| Sbjct 362 TTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAA 400 >seq368 Length=262043 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTA-TACATTTCAGAATGAATATTTTCAATAGC 23831 ||| | ||||| || ||||| | || | | |||| ||| || || ||||| || || || Sbjct 28551 TCTTTGATATACGTGTCAATCAA-AAGCGAGTACACTTCCGAGTGTATATTCTCGATTGC 28609 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 || |||||||| ||||| || | ||| || | || || || || || ||| | | Sbjct 28610 GATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAATTCAT 28669 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 |||| |||||| || || || || |||||||||||||||||||| || |||| || || Sbjct 28670 GGCTAGATTTTCATTCACGATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAAT 28729 Query 23952 AAAAT 23956 |||| Sbjct 28730 GAAAT 28734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521473887231000