Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1422 131 1e-25 seq1110 123 2e-23 seq1355 122 6e-23 >seq1422 Length=277306 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| | |||||| || || ||||| || || | || |||| || Sbjct 271304 CACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTC 271245 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| |||||||| |||| |||||||||||| | || | |||||||| ||| Sbjct 271244 GAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTG 271185 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || | ||| | | |||||| |||| || |||||||| Sbjct 271184 GATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTT 271125 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| |||||||| Sbjct 271124 ACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| |||||| || || ||||| || || | || |||| || Sbjct 271531 ACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCG 271472 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||||||| | || | |||||||| ||| Sbjct 271471 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGG 271412 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| || ||| | || | || | || ||||| |||| ||||||||||| Sbjct 271411 ATCTTTTGCTTTACATTGT--CGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCT 271354 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||||| || || ||||||||| Sbjct 271353 TACCAGTCAAAGTCTTTACAAAAATTTGCATG 271322 >seq1110 Length=486086 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||| |||||||| || || ||| || | || || || ||||| || ||||||| Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||||||||| || | || | |||||||| ||| || |||||||| || ||| Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 256173 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | |||||| |||| |||||| ||||| ||||| | ||||| || Sbjct 256172 --CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGAC 256115 Query 44326 GAAGATTTGCATGA 44339 || || ||||||| Sbjct 256114 AAAAATCTGCATGA 256101 >seq1355 Length=184863 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | |||||| |||||||| || |||||| ||||||||||| || Sbjct 90652 CATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 90711 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||| |||||| || ||||| || | ||| ||||| || | Sbjct 90712 GCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 90771 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||||||||||| | | || | ||||| | || Sbjct 90772 TGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTC 90831 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || || ||||||||||| | ||||| ||||| || |||||| Sbjct 90832 AACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 90883 Score = 114 bits (126), Expect = 9e-21 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTT-TGGATGTTGTAAT 44165 ||| || || | ||| | |||||| |||||||| || ||||||| ||||||||||| | Sbjct 90880 CATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGT 90939 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || |||| |||| |||||| || ||||| || | ||| ||||| || | Sbjct 90940 CGCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAG 90999 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||||||||||| | | || | ||||| | | Sbjct 91000 GTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCT 91059 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||||||||| | ||||| ||||| || |||||| Sbjct 91060 CAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 91112 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | |||||| |||||||| || |||||| ||||||||||| || Sbjct 91109 CATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 91168 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | | | || |||| |||| |||||| || ||||| || | ||| ||||| || | Sbjct 91169 GCTCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAG 91228 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||||||||||| | | || | ||| | | | Sbjct 91229 GTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCT 91288 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||||||||| || ||||| || || || ||||| Sbjct 91289 CTACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 107 bits (118), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | |||||| |||||||| || ||| || ||||||||||| ||| Sbjct 90426 TTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGC 90485 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || || |||| |||| |||||| || ||||| || | ||| ||||| || | | Sbjct 90486 TCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 90545 Query 44229 GCACACCTTCCTTTTCC--GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 | | |||||||| ||| | |||||||||||| | | | || | ||||| | || Sbjct 90546 GAATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACT-TGTCGATCGAGTCGGAAG-CTC 90603 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||| ||||||||||| | ||||| || || || |||||| Sbjct 90604 AACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATG 90655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980901315805