Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1775 145 2e-29 seq1355 131 4e-25 seq1422 129 1e-24 >seq1775 Length=332822 Score = 145 bits (160), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || || || || || || || ||||| Sbjct 274769 AAAATGC---AGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAG 274825 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || | ||| || || |||||||| || ||||||||||| ||||| || || || Sbjct 274826 CCCTCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCC 274885 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||| || || || |||||||||||||| ||||| | || || Sbjct 274886 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGAC 274945 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | || |||||||| || ||||| || || ||| Sbjct 274946 TACAATATTCAGAAAGAATCGACGCTGCACCTCGTGTTG 274984 >seq1355 Length=184863 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| || || || || || ||| Sbjct 90879 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCCGAC 90820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 90819 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 90760 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| ||| || ||| || Sbjct 90759 CGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATC 90700 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || ||||| ||| Sbjct 90699 CAGAAGGAGTCGACCCTTCACCTTGTGTTG 90670 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| || || || || || ||| Sbjct 91108 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCCGAC 91049 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 91048 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 90989 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||| | ||| || ||| || Sbjct 90988 CGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAACATC 90929 Query 178104 CA-AAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| || || || || || ||||| ||| Sbjct 90928 CAGAAAGGAGTCGACCCTTCACCTTGTGTTG 90898 Score = 120 bits (132), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || ||||| || ||||| ||||| || || || ||| Sbjct 91337 CAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCCATCTGAC 91278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 91277 TCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 91218 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG-GACTCTTGCCGATTATAACGT 178102 || || || || || || || ||| | || || || | ||| | ||| || ||| | Sbjct 91217 CGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACTACAACAT 91158 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| || || || || || || ||||| ||| Sbjct 91157 CCAGAAGGAGTCGACCCTTCACCTTGTGTTG 91127 Score = 105 bits (116), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGA 177982 || ||||| || || ||| | || ||||| || || || || || || || ||| | || Sbjct 90651 CAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGA--GCTTCCGA 90594 Query 177983 CACCATCGAGAACGTCAAACAAAAGA--TTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 | | ||||| || || || || |||| || ||||||| |||||||| || || |||||| Sbjct 90593 CTCGATCGACAA-GTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACCAG 90535 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || || || || || || ||| | || || || | ||||| ||| || ||| Sbjct 90534 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAAC 90475 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| || || || || ||||| ||| Sbjct 90474 ATCCAGAAAGAGTCGACTCTTCACCTTGTGTTG 90442 >seq1422 Length=277306 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || |||||||| | || |||||| || ||| Sbjct 271098 CAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTCGGAC 271157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || |||||||| |||||||| |||||||| || || || ||||| Sbjct 271158 TCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCAGCAG 271217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || || || || ||||| || |||||||| || || | ||| | || || || || Sbjct 271218 CGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAA 271273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203697809625010