Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1422 136 4e-27 seq1775 127 2e-24 seq1355 111 1e-19 seq1110 105 6e-18 >seq1422 Length=277306 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | ||| | |||||| || ||||| | ||||||||| || || ||||| | Sbjct 271322 GCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGC 271263 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| ||||||||||||||||| |||||||| ||||| || || | || Sbjct 271262 CAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGG 271203 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| |||||||| ||| | | | ||| | |||| Sbjct 271202 AATTCCTTCCTTGTCCTGGATCTTTTGCTT-TACGTTATCGATCGAGTCCGAAGGTTCCA 271144 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 271143 CGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 134 bits (148), Expect = 1e-26 Identities = 171/238 (72%), Gaps = 18/238 (8%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | ||| | ||||| || ||||| |||||||||||| || ||||| | Sbjct 271550 GCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGC 271491 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| |||||||||||||| || || ||||| ||||| || || | || Sbjct 271490 CAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGG 271431 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------ 41808 || || ||||||||| ||| |||||||| ||| ||||| |||| Sbjct 271430 AATGCCTTCCTTGTCCTGGATCTTTTGCTT---------TACATTGTCGATCGAATCCGA 271380 Query 41809 ---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| |||| ||| ||||| ||||| |||| |||||||| ||||| |||||| Sbjct 271379 GGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATG 271322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| |||||||| | |||||| || ||||| ||||||||| || || ||||| | Sbjct 271877 CCGCCACGTAGACGAAGCACCAGGTGGAGCGTAGACTCCTTCTGTATATTGTAGTCAGCC 271818 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| |||||||||||||| || || ||||| ||||| || || | ||| Sbjct 271817 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271758 Query 41756 ACGCTCTC 41763 | ||| || Sbjct 271757 ATGCTGTC 271750 >seq1775 Length=332822 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || ||||| || ||||| ||||| || |||||||| || |||||||| || ||||| Sbjct 275001 CCACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCT 274942 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | | || || | || |||||||||||||| || || ||||| ||||| ||||| | Sbjct 274941 GCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGT 274882 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTC 41811 |||| | ||||||||| ||||| || || | | | || | | || | ||| Sbjct 274881 GGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGA-CATTGTCAATGCTATCCGAGGGCTC 274823 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| |||| ||| || || || |||||||| ||||| |||||||||||||| || Sbjct 274822 CACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1355 Length=184863 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| || || || || ||||||||| ||||| |||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | ||||||||| || || || || || || ||||| | || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| || || ||||||| || | | | | |||| | ||| | Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCTCAA 90833 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || ||||||| ||||| ||||||||||||||| Sbjct 90834 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 90883 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTT-CTGAATGTTATAGTCGG 41693 ||| || || ||||| ||||| || || || || |||||| ||| ||||| |||||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || || |||| || | ||||||||| || || || || || || ||||| | | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| | ||||||||| || || ||||||| || | | | | |||| | ||| Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCTCA 91061 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || ||||||| ||||| ||||||||||||||| Sbjct 91062 ACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 91112 Score = 100 bits (110), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| || || || || ||||||||| ||||| |||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 41695 GAGGGTG-CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || || |||| || | ||||||||| || || || || || || ||||| | | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| | ||||||||| || || ||||||| || | | | ||| | ||| Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTATCGATCGAGTCAGATGGCTCT 91290 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || | || || || || ||||||||||||||||| ||||||||||| |||| Sbjct 91291 ACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGTATC 91346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || ||||| || || || || ||| ||||| ||||| |||||| Sbjct 90428 CCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 90487 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || || || || || ||||| | ||| Sbjct 90488 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90547 Query 41756 ACGCTCTCCTTGTCCATGATTTTTT--GCTTCAAC-GACGACACAGTGTCGCTCGACTCC 41812 | | ||||||||| |||| || |||||| | ||| ||| || | ||| Sbjct 90548 ATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACTTGTCGATCGAGT--CGGAAG-CTCA 90604 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || ||||||| ||||| || |||||||||||| Sbjct 90605 ACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATG 90655 >seq1110 Length=486086 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| |||||||| ||||| | || | || | || || || |||||||| || || | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | |||| || ||||||||| |||||| ||||| | | | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTG 256174 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || ||||| |||| ||| || || || ||||||| |||||| || Sbjct 256173 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 41852 AAAATCTGCATG 41863 |||||||||||| Sbjct 256113 AAAATCTGCATG 256102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291488898000