Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1382 331 1e-85 seq181 158 2e-33 seq1421 145 1e-29 seq207 140 5e-28 seq182 113 7e-20 >seq1382 Length=24816 Score = 331 bits (366), Expect = 1e-85 Identities = 443/607 (73%), Gaps = 13/607 (2%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418 |||||||| ||| ||| | ||| || ||| ||| | ||| | || |||| || ||| Sbjct 15345 TAATTGTTCTTTCAATGGTTCAATGTGGTTATTATAAACATGAGTATCACCAGTAACATG 15286 Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 | ||| ||| ||||||||| ||| | ||| || || | | ||||||||| || Sbjct 15285 TACAAACTCACCTGGTTTTAACCCAGTAACATGAGCGATTAAAATAGTCAATAATGAGTA 15226 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 | || | ||||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 15225 AGATGCTATATTAAATGGAACGCCTAATCCCATATCGCATGATCTTTGATACATTTGACA 15166 Query 205539 TGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAA 205597 || | | | | |||| |||||| ||| || ||| | || ||||||||| |||| Sbjct 15165 TGATA---ACTCACCATTACTTACATAAAACTG-ACACATCATATGACAAGGAGGTAATG 15110 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA-GATTCA--G 205654 |||| || || | | |||||||||| ||||| ||||| || |||| ||| | | Sbjct 15109 CCATTTTAGGAATAGCACTAGGATTCCAAGCTGTCAATATAAT---TCTACGATCCGTTG 15053 Query 205655 GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAAT 205714 | || ||||| ||| | | ||| | | | ||||| |||| ||||| ||| ||||||| Sbjct 15052 GATTGTTTTTAATTGTTTCTATTACTTCCTTCAATTGGTCAACTCCTTTATTAGTATAAT 14993 Query 205715 TTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGAC 205774 |||| | || |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 14992 CAGTATTGAAGTCTTTATATTCAGCACCAAAATGACGCCATTGAAATCCATAAACTGGAC 14933 Query 205775 CTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccat 205834 |||||||||| ||| |||||| || ||||| ||| | | ||| | ||| |||| Sbjct 14932 CTAAATCACCCACTTCTCTATCCTTTAAACCTAATTTATCAAGGAATTCTCTTGAACCAT 14873 Query 205835 tttcatcccaaatatggat-tcctttattttttaGAATATTTGTATTAGTTGATCCAGAT 205893 | ||||||||||||| || | |||| | | ||| ||| | ||| || ||| Sbjct 14872 TGCCATCCCAAATATGAATGTTCTTT-TCTGCGAGATGATTGGCATTTGTATCACCATTA 14814 Query 205894 ATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAAT 205953 ||||||||||||||||| ||| ||| |||||||||||| | | ||||||||| |||||| Sbjct 14813 ATAAACCATAATAATTCCTCAGCAACTCCTCTCCAAAATACTCTTTTTGTTGTTAATAAT 14754 Query 205954 GGAAATG 205960 || |||| Sbjct 14753 GGCAATG 14747 >seq181 Length=610132 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||||||||| || | || ||||| ||| | Sbjct 522306 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522365 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||||||||||||||||||||| || || |||||| Sbjct 522366 GATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 522425 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || || || |||||||| ||| || |||| | ||||| || Sbjct 522426 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTACAAC 522485 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| ||||| ||||| || ||| | || |||||||||| Sbjct 522486 ATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGGTAT 522535 Score = 152 bits (168), Expect = 8e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||||||||| || | || ||||| ||| | Sbjct 522534 ATGCAAATCTTTGTTAAAACCCTTACTGGCAAAACTATTACCCTTGATGTTGAACCAAGT 522593 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||||||||||||||||||||| || || |||||| Sbjct 522594 GATACTATTGACAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 522653 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || || || |||||||| ||| || |||| | ||||| || Sbjct 522654 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTCTCAGTGATTACAAC 522713 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| |||||||| ||||| ||||| || ||| | || ||||||| Sbjct 522714 ATTCAGAAAGAATCTACTTTACATTTAGTGTTAAGATTGAGAGGTGG 522760 >seq1421 Length=125447 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAAC 124620 ||| ||| ||||| || || | || | ||| || ||||||||| ||| |||| Sbjct 52119 TAATAGGTAAAACAATTACACTTGATGTAGAACCATCAGATACAATTGATAACGTAAAGG 52178 Query 124621 AGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAA 124680 || || ||||||||||||||||| ||||| ||||||||||| | |||||||| || | Sbjct 52179 CTAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTTGCTGGTA 52238 Query 124681 AACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGC 124740 |||||||||| ||| | |||||||| ||||| || || ||||||||||| || | | Sbjct 52239 AACAATTAGAAGATGGCAGAACATTATCTGATTACAACATCCAAAAAGAATCCACACTTC 52298 Query 124741 ATTTGGTTTTACGTTTACGAGGTGG 124765 |||| || ||| | ||| ||||||| Sbjct 52299 ATTTAGTCTTAAGATTAAGAGGTGG 52323 >seq207 Length=264058 Score = 140 bits (154), Expect = 5e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| |||| || || ||||||||||||||||| ||||| |||||| Sbjct 251512 GATACAATTGATAACGTAAAGGCTAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 251453 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| ||| || |||||||| ||||| ||| Sbjct 251452 CAAAGATTGATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACATTATCTGATTACAAT 251393 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || |||||||||||||| | || || || || | ||| |||| ||| ||| Sbjct 251392 ATCCAAAAAGAATCAACACTTCACTTAGTATTGAGATTAAGAGGCGGTGTTA 251341 >seq182 Length=52265 Score = 113 bits (124), Expect = 7e-20 Identities = 165/230 (72%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418 |||||||| ||| ||| | ||| || ||| ||| | ||| | || |||| || ||| Sbjct 226 TAATTGTTCTTTCAATGGTTCAATGTGGTTATTATAAACATGAGTATCACCAGTAACATG 167 Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 | ||| ||| ||||||||| ||| | ||| || || | | ||||||||| || Sbjct 166 TACAAACTCACCTGGTTTTAACCCAGTAACATGAGCGATTAAAATAGTCAATAATGAGTA 107 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 | || | ||||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 106 AGATGCTATATTAAATGGAACGCCTAATCCCATATCGCATGATCTTTGATACATTTGACA 47 Query 205539 TGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAA 205587 || | | | | |||| |||||| ||| || ||| | || ||||||| Sbjct 46 TGATA---ACTCACCATTACTTACATAAAACTG-ACACATCATATGACAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442326246400