Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq181 98.7 8e-16 seq207 93.3 3e-14 seq1421 86.0 5e-12 >seq181 Length=610132 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| ||||||||||| || | ||| ||| |||||| ||||| || || Sbjct 522502 GTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCA 522443 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | |||||||||||| || | ||||| ||||| ||||| |||| Sbjct 522442 GCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTG 522383 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||| |||| || || |||| ||| || ||||||| || | ||| Sbjct 522382 ACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTT 522323 Query 18309 TTTACAAAAATTTGCAT 18325 || ||||| |||||||| Sbjct 522322 TTAACAAAGATTTGCAT 522306 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| ||||||||||| || | ||| ||| |||||| ||||| || || Sbjct 522730 GTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCTTCTAATTGCTTACCA 522671 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | |||||||||||| || | ||||| ||||| ||||| |||| Sbjct 522670 GCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTG 522611 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||| |||| || || |||| ||| || ||||||| || | ||| Sbjct 522610 ACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTTTTGCCAGTAAGGGTT 522551 Query 18309 TTTACAAAAATTTGCAT 18325 || ||||| |||||||| Sbjct 522550 TTAACAAAGATTTGCAT 522534 >seq207 Length=264058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| | ||| | ||||||||||||||||||||| || ||||| || | Sbjct 251346 CCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGAT 251405 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| |||||||| || || | || | |||||||||||| || Sbjct 251406 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGA 251465 Query 18219 ACGCCTTCCTTATC 18232 | ||||| ||||| Sbjct 251466 ATACCTTCTTTATC 251479 >seq1421 Length=125447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| ||||||||||| |||||||| || | | |||| | | |||||| |||||| Sbjct 52299 TGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTTCTGCCATCTTCTAATTGT 52240 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 52239 TTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATC 52190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379337305526760