Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq181 107 2e-18 seq1421 98.7 1e-15 seq207 84.2 2e-11 >seq181 Length=610132 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || |||||||| | ||||||||||| || ||||||||||| || | || || ||| Sbjct 522517 AACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCT 522458 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||| |||||||| |||||| | ||| ||||| ||||| || |||||||| || Sbjct 522457 TCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 522398 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| || | | || | || || | ||||| || |||| || | || Sbjct 522397 TGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTT 522338 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT-AGCTTATGTTTTA 143197 ||||| || | ||||| || || |||||||| || ||| ||| || Sbjct 522337 TTGCCAGTAAGGGTTTTAACAAAGATTTGCATGAGTTTAAGTTATA 522292 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || |||||||| | ||||||||||| || ||||||||||| || | || || ||| Sbjct 522745 AACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTGAGAGTTCTACCATCT 522686 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||| |||||||| |||||| | ||| ||||| ||||| || |||||||| || Sbjct 522685 TCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 522626 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| || | | || | || || | ||||| || |||| || | || Sbjct 522625 TGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACATCAAGGGTAATAGTT 522566 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | ||||| || || ||||||||| Sbjct 522565 TTGCCAGTAAGGGTTTTAACAAAGATTTGCATA 522533 >seq1421 Length=125447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || |||||||||| ||| ||||||||||| ||||||||||| Sbjct 52323 CCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGAT 52264 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||||||||||||| | |||| | ||| ||||| || || Sbjct 52263 AATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 52204 Query 143078 ATGCCTTCTTTGTC 143091 || |||||||| || Sbjct 52203 ATACCTTCTTTATC 52190 >seq207 Length=264058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||| ||||| |||| ||| ||||||||||| || |||||||| Sbjct 251346 CCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGAT 251405 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||||||||| || | |||| | ||| ||||| || || Sbjct 251406 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGA 251465 Query 143078 ATGCCTTCTTTGTC 143091 || |||||||| || Sbjct 251466 ATACCTTCTTTATC 251479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005223039360