Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq181 178 9e-40 seq1421 141 7e-29 seq207 118 8e-22 >seq181 Length=610132 Score = 178 bits (196), Expect = 9e-40 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||||||| |||||||| | || || ||||| || ||||||||||| || Sbjct 522760 CCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTG 522701 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||||||| || |||||| | ||||| | |||||| || ||| Sbjct 522700 AGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGA 522641 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||||||| ||| || | || || ||||| || ||| ||| Sbjct 522640 ATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACA 522581 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 522580 TCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCATA 522533 Score = 176 bits (194), Expect = 3e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||||||| |||||||| | || || ||||| || ||||||||||| || Sbjct 522532 CCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACTG 522473 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||||||| || |||||| | ||||| | |||||| || ||| Sbjct 522472 AGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGA 522413 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||||||| ||| || | || || ||||| || ||| ||| Sbjct 522412 ATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAACA 522353 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| ||||| || || || ||||| ||||| |||||||| Sbjct 522352 TCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522306 >seq1421 Length=125447 Score = 141 bits (156), Expect = 7e-29 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 52323 CCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGAT 52264 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| ||||| | ||||| | |||||| || |||| Sbjct 52263 AATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 52204 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || || || |||||| | || || ||||| ||||||| Sbjct 52203 ATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACA 52144 Query 15317 TCTAAGGTAATGGTTTTACCT 15337 || | ||||| ||||||||| Sbjct 52143 TCAAGTGTAATTGTTTTACCT 52123 >seq207 Length=264058 Score = 118 bits (130), Expect = 8e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| || ||||| ||||| || || |||||||| || |||||||| | Sbjct 251346 CCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGAT 251405 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 251406 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGA 251465 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || || || |||||| | || || ||||| || ||| Sbjct 251466 ATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGACA 251525 Query 15317 TCTAAGGTAATGGTTTTACC 15336 |||||||| ||||| ||||| Sbjct 251526 TCTAAGGTGATGGTCTTACC 251545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172808442568