Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq181 116 3e-21 seq1421 109 4e-19 seq207 87.8 1e-12 >seq181 Length=610132 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||||||||| ||||||| || ||||| ||||| || ||||| | Sbjct 522533 ACCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCACT 522474 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || ||||| || || || || ||||| | ||| || || |||| Sbjct 522473 GAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGG 522414 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||||| | ||| |||||| || || || Sbjct 522413 AATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCAAC 522354 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| | ||||| ||||| || || | || || ||||| ||||||||| Sbjct 522353 ATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCATG 522305 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 43892 CAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCG 43951 || || ||||||||||||||||| ||||||| || ||||| ||||| || ||||| Sbjct 522763 CATCCACCTCTCAATCTTAACACTAAATGTAAAGTAGATTCTTTCTGAATGTTGTAATCA 522704 Query 43952 TTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA 44011 | | | |||| || ||||| || || || || ||||| | ||| || || || Sbjct 522703 CTGAGAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGA 522644 Query 44012 GGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCC 44071 || | ||||||||||||| |||||| ||||| | ||| |||||| || || Sbjct 522643 GGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTATCACTTGGTTCA 522584 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| ||||| || || | || || ||||| |||||||| Sbjct 522583 ACATCAAGGGTAATAGTTTTGCCAGTAAGGGTTTTAACAAAGATTTGCAT 522534 >seq1421 Length=125447 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| |||||||| || ||||| || ||| |||||||| || || ||||| | Sbjct 52323 CCACCTCTTAATCTTAAGACTAAATGAAGTGTGGATTCTTTTTGGATGTTGTAATCAGAT 52264 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| || |||||||| || ||||| ||||| | ||| || || | || Sbjct 52263 AATGTTCTGCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 52204 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| || || || || || ||| ||||||| || || ||| Sbjct 52203 ATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGTTCTACA 52144 Query 44075 TCGACCGTAATTGTTTTACC 44094 || | |||||||||||||| Sbjct 52143 TCAAGTGTAATTGTTTTACC 52124 >seq207 Length=264058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || || || || || |||||||| ||||| ||||| Sbjct 251345 ACCGCCTCTTAATCTCAATACTAAGTGAAGTGTTGATTCTTTTTGGATATTGTAATCAGA 251404 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || |||||||| || || || ||||| | ||| || || | || Sbjct 251405 TAATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGG 251464 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| || || || || || ||| ||||||| ||||| || Sbjct 251465 AATACCTTCTTTATCTTGGATCTTAGCCTTTACGTTATCAATTGTATCTGATGGCTCGAC 251524 Query 44074 ATCGACCGTAATTGTTTTACC 44094 ||| | || || || ||||| Sbjct 251525 ATCTAAGGTGATGGTCTTACC 251545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771339062304